KEGG   Denitrificimonas caeni: O6P33_04645
Entry
O6P33_04645       CDS       T08709                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
dce  Denitrificimonas caeni
Brite
KEGG Orthology (KO) [BR:dce00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dce03016]
    O6P33_04645
Enzymes [BR:dce01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     O6P33_04645
Transfer RNA biogenesis [BR:dce03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    O6P33_04645
 Prokaryotic type
   tRNA splicing ligases
    O6P33_04645
SSDB
Motif
Pfam: RtcB Spectrin_Anc-1
Other DBs
NCBI-ProteinID: WBE26124
UniProt: A0AAF0AJL8
LinkDB
Position
complement(964014..965186)
AA seq 390 aa
MHKNGRAIIKTEKLPIKLWLKEEQMDEGALQQARNLANLPFAFKHIAIMPDTHQGYGMPI
GAILATKGVIIPNAVGVDIGCGMCSLRTNLTEIDTDDLKEIIKIIRETIPVGFNRHKTAQ
DPAWMPEVTGNLPIVTQEYDNALYQIGTLGSGNHFIEIQQGSDGYIWIMVHSGSRNIGFT
VANHYHAIAQELNQAAGEDIANDLAFLPESSKYFTLYKNEMDYCLEFALANRTLMMERVK
TAFTQVIPEVEFADFINKPHNFAAEEEHFGETVIVHRKGATRARKGEWGMIPGSQGTRSF
LVKGKGEAQSFQSCAHGAGRIMSRAQARKQLDVRTEVKALKEQGILHAIRSRKDLDEAPG
SYKDIDEVMDNQKDLVDIQIELQPLAVVKG
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgcacaaaaacggacgagcaattattaaaacagagaaactgcccatcaagctttggctc
aaagaagagcaaatggacgaaggtgcactgcaacaagcacgcaaccttgccaatttacct
tttgcctttaaacacattgccattatgcctgatacccaccaaggctacggcatgccaatt
ggcgcgattctcgctactaaaggcgttattatccccaacgctgtaggtgtggatattggc
tgcggcatgtgttcgctgcggactaatttgaccgagatcgacacagacgacctcaaagaa
atcatcaaaatcattcgcgagacaattccggtgggcttcaaccgccataaaaccgctcaa
gatcctgcatggatgccagaagtaacaggcaaccttcccatagtcacgcaagagtatgac
aatgctctgtatcaaattggtactttaggcagcggcaatcactttattgaaatccagcaa
ggctcagacggttacatttggattatggtccactcgggttcacgcaatatcggctttacc
gtcgctaaccattaccacgcaatagctcaagaactcaatcaagcagcgggtgaagatatt
gccaatgacttagcgtttctacctgagtcatcaaagtattttacgctctacaaaaacgaa
atggattactgcttagagtttgctttagccaatcgcaccctgatgatggaacgcgttaaa
actgcatttacacaggtgatacctgaggttgagtttgctgacttcattaacaaaccccat
aactttgctgctgaagaagagcactttggcgaaactgtcatcgtccaccgcaaaggcgca
acccgcgcccgcaaaggtgaatggggcatgattcctggctcgcagggaacgcgctcgttt
ctggtgaagggtaaaggggaagcccaatcatttcagtcctgtgcgcacggcgccggacgc
attatgagtcgcgcccaagcacgtaaacaactggatgtcagaactgaagttaaagccctc
aaagaacaaggtattttgcatgccatccgcagccgcaaagaccttgatgaggcgccgggt
tcttacaaagatattgatgaagtgatggacaaccaaaaagatttggtcgacatacaaatt
gagttgcagccactggctgtggtcaaaggttaa

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