Denitrificimonas caeni: O6P33_05485
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Entry
O6P33_05485 CDS
T08709
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
dce
Denitrificimonas caeni
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dce03016
]
O6P33_05485 (rnd)
Enzymes [BR:
dce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
O6P33_05485 (rnd)
Transfer RNA biogenesis [BR:
dce03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
O6P33_05485 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
WBE26278
UniProt:
A0AAF0AM93
LinkDB
All DBs
Position
1145611..1146735
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AA seq
374 aa
AA seq
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MTIQINWICSDAELAERCKYWNTLAFIALDTEFIRVDTFYPIAGLLQVSDGENTYLLDPL
LINNWQPLAQLFNNPQVVKVLHACGEDLEVFSLLVGALPAPMFDTQLAAGYLNIGFSMGY
SRLVEQLLDIELPKGETRSDWLQRPLTELQVLYAAQDTAYLVDVYQALAQQLTEQKYAWV
LEDGAALVASYEQEPDPYEFWRTVKLAWKLTPQQLAVLRELAAWRELQARARDVPRNRII
RESTLWALANEQPRDMTHLAQLEDMHPRILRKEGATLLSLIKQAKGLPEQDWPPALPEPL
PVEATKLLKRLRKIGLDLGGKLDIAPEMMLRKKILEELLRSGYPSGPYTLPESLQGWRRE
LLGESLLQCLEDIQ
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
gtgaccatacaaattaactggatatgcagcgacgctgagctagcagagcgctgcaaatat
tggaatacattagcatttatagccttggatactgagtttatccgcgttgataccttctac
ccgattgccggcctgttgcaggtcagtgatggtgaaaatacttacttgcttgatcctttg
ttgattaataattggcagcctttagcgcagctttttaataatccgcaggtggtcaaggtg
ctgcatgcttgcggcgaggaccttgaagtgttttcgttgctggtgggcgctctgcctgcg
ccaatgtttgatacgcagttagctgctgggtatttaaatattggcttttcaatgggctat
tcacgtttagtggagcagctattagacattgagctgcctaaaggcgagacccgctctgat
tggttgcagcgcccgttaaccgagctgcaagtgctttatgcagcgcaagatacagcctac
ttagttgatgtctatcaagcgcttgcccagcagttgactgagcaaaagtatgcttgggtg
ttggaagatggtgccgctttagttgccagctatgagcaagagcctgacccttacgagttt
tggcgtacagtgaaattagcgtggaagttgaccccgcagcagcttgcagtgttacgagag
ttggcagcatggcgcgagttgcaagcccgcgcgcgtgatgtgccgcgcaatcgcattatt
cgtgagagtacgctgtgggcgttggccaatgagcaacccagagatatgacgcacctggct
cagttggaggatatgcatccgcgtatcttgcgtaaagaaggtgctactttattaagtctg
attaagcaggccaagggtttgcctgagcaagattggccgccggccctgcctgagcctttg
cccgttgaggcaactaaactattaaagcgtttacgcaaaataggtctggatcttgggggg
aagctcgatatcgccccagaaatgatgctgcgtaaaaaaatccttgaagagcttttgcgt
agcggctaccccagtggcccttatactttgccggagagtttgcaagggtggcgccgagag
ttgctgggtgagtcattattgcagtgtttagaggatatacagtga
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