Denitrificimonas caeni: O6P33_07060
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Entry
O6P33_07060 CDS
T08709
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dce
Denitrificimonas caeni
Pathway
dce03030
DNA replication
dce03430
Mismatch repair
dce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O6P33_07060 (dnaE)
03430 Mismatch repair
O6P33_07060 (dnaE)
03440 Homologous recombination
O6P33_07060 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dce03032
]
O6P33_07060 (dnaE)
03400 DNA repair and recombination proteins [BR:
dce03400
]
O6P33_07060 (dnaE)
Enzymes [BR:
dce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
O6P33_07060 (dnaE)
DNA replication proteins [BR:
dce03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
O6P33_07060 (dnaE)
DNA repair and recombination proteins [BR:
dce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
O6P33_07060 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WBE24151
UniProt:
A0AAE9VSH3
LinkDB
All DBs
Position
1481279..1484797
Genome browser
AA seq
1172 aa
AA seq
DB search
MSASFVHLRVHSEFSVVDGIVRIKPLIKAVSDVGMPAVAVTDQNNMSSLVKFYTAAQKGA
VKPIAGADIWLASAEEDGPLTRMTLLVVNPEGYRNLTELISLGYTQGQHNGLVVIQREWV
VRFAAGLIALSGAKEGEIGLALLAGETAKAEQLLASWQGVFTDRFYLELQRTERPNDEEH
VHAAVALAARSGVPVVATNDVRFLRKEDFEAHETRVCIGEGRALDDPRRQRVYSEQQYLK
TPEEMAELFADIPEALRNSVEIAKRCNIEVQLGTHFLPDFPVPEGMTIGEYLSQVSFEGL
EERLSVTLPKDTPDYAAKRQVYDDRLTFELNIINQMGFPGYFLIVMDFIHWAKNNGVPVG
PGRGSGAGSLVAYVLHITNIDPLLYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVA
DRYGREAVSQIITFGTMAAKAVVRDVARVQGKAYGLADRLSKMIPFEPGMTLGKAFAAEE
ALRDFLAVDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPVSCDEDGEGLVT
QFDKDDVESAGLVKFDFLGLRTLTIIKWALENINRDRAKLNEPPLDIDFIPLDDKPTYQM
LQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA
ELAYPHPDYQYAGLEPVLEPTYGIILYQEQVMQIAQVMAGYSLGEADMLRRAMGKKQPEE
MAQQRGGFIAGCKNNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKQHYP
PQFMAAVLSADMDNTDKVVILVDECRSMKLRLVAPDVNQSEYKFTVNDEGHVVYGLGAIK
GVGEGPVEAIVSARGNQPFKDLFDFCARMDLKRINKRTLDALVRSGALDRMGPYFSEQLD
EYLAGIDRNRAVLLAAMEEALKTADQAARNLESGHMDLFGDILAEQEVDIYAQYRNAREL
TLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRLVDLRPSRDTQTVAGLIISLRVMR
NKKGDRMGFIVLDDRSARVEVSLFSEAFNQAQALLQTDALVVVEGEVSHDDFSGGLRVRA
KRVMSLEEARTGLAESLRLNVSVTDLSRDSLARLKALLLQYKGQCPLTVNYNGGSAKALL
EFSSDWQIEPTDDLIQALRDLFGRDNVFLHYR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatcatttgttcatttacgtgtgcacagcgagttttcagtggtggatggcatt
gtgcgcatcaagccgctgattaaagctgtaagtgatgtagggatgcccgcggttgccgta
acagaccaaaacaacatgagttctttggttaagttttacacagcagcgcaaaagggcgca
gtgaaacctattgcaggggcagatatctggctggccagtgcagaagaagatggcccgcta
acgcgcatgaccttgttagtcgtcaatcccgaaggttaccgcaatctcactgaattgatt
tcactgggctatacccaaggtcagcacaatggtttggttgttattcagcgtgaatgggtt
gtgcgctttgctgcgggactaattgctttatctggggcgaaagagggtgagattggttta
gcactgttggccggtgaaacagctaaagctgagcaattgctggcgagctggcaaggggtt
tttactgatcgcttttatttggagctgcaacgcaccgagcgccccaacgatgaagagcat
gtgcatgctgcagtggcgttagctgcgcgcagtggtgtgcctgtggttgcaaccaatgat
gtgcgttttttgcgtaaagaagactttgaagcgcacgaaacacgggtgtgcatcggggag
gggcgagcgttagatgacccacgccggcagcgggtgtattccgagcagcaatatttaaaa
acgccagaagaaatggctgagttgtttgccgatatcccagaagcattacgcaacagcgtt
gagattgctaagcgctgtaatatcgaagtgcaattgggtacgcactttttgccggacttc
cctgtgcctgagggcatgactattggtgagtacctcagtcaagtctcttttgaaggttta
gaagagcgtctgtcggttactttgcctaaagacactccagattacgccgcaaagcgccaa
gtgtatgacgatcgcctcacctttgagttgaatattattaaccagatgggctttcctggt
tacttcttgatcgttatggactttatccactgggcgaaaaacaatggcgtaccagtgggg
ccgggacgaggttctggggccggtagtttagtggcgtatgtactgcacattactaacatt
gaccccttattgtacgacctgctttttgagcgcttcctgaaccctgagcgggtttccatg
cctgactttgacgtggacttctgcatggatggccgcgatcgcgtgattgactatgtggct
gatcgttatgggcgtgaggcggtcagtcaaattattacctttggtactatggcggcgaaa
gctgtagtgcgtgatgtggcgcgggtgcaaggcaaagcctatggcttggctgatcgtctg
tcgaaaatgattccatttgagcctggcatgactctcggtaaggcctttgccgcagaggag
gccttacgggacttcttagcggtggacgaagaggctgcagaaatttgggagatggcgctc
aagcttgagggaattacccgcggtaccggtaaacatgccggtggtgtggtgattgcgcca
accaagctaacggatttttcgccagtttcgtgcgatgaagacggtgaggggttagtcaca
cagtttgacaaggatgatgttgagtccgctgggctggtgaagtttgacttcttaggcttg
cgcaccctaaccattattaaatgggcgttggagaatattaaccgcgaccgcgccaaactc
aatgagccaccgctggacattgattttattccgctggacgacaagcccacttatcaaatg
ctgcagcgtgcagaaaccactgcggtgttccagcttgaatcgcgcggtatgaaagagctg
atcaaaaagctcaagcctgactgcttggaagacctcattgctctggttgccttattccgc
cccggccctttgcaatcgggcatggttgacgactttattaaccgtaagcatggtcgagca
gagctggcttatccgcacccagactatcaatacgcaggtttggagcctgttctagagccc
acttacgggattattctctatcaagaacaggtgatgcagattgctcaggtgatggctggt
tactccctcggtgaagcagatatgttgcgccgtgctatgggtaaaaaacagccggaagaa
atggcgcagcagcgcggcggttttattgcgggttgtaaaaacaacaatattgatgctgat
ctggccggtaatatttttgacttggttgagaaatttgccggttacggttttaacaagtcg
cactcggcagcctacggtctagtctcgtatcaaaccgcttggttaaagcagcattacccg
ccgcaatttatggcggcagtgttgtcggcggatatggataacaccgataaagtggttatt
ctggttgatgaatgccgcagtatgaaattgcgcctggtcgcgccggatgtgaatcagtcg
gaatataagtttacggtcaatgatgaagggcatgtggtttacgggcttggcgcgattaaa
ggtgtgggtgaggggccggtagaagccattgtcagtgcgcgcggtaatcagccttttaag
gatctattcgatttttgtgcacgcatggatctcaagcgtatcaataaacgcactctggat
gcattagtgcgcagcggtgccttagaccgtatggggccgtatttctctgagcagttggat
gaatacctggcgggtattgaccgtaaccgcgcggtgctgttggcggcgatggaagaggca
ctaaaaactgcggatcaagccgcgcgtaatctagaaagcgggcatatggacttgtttggc
gatattttagctgagcaagaggtggatatttatgcgcaataccgcaatgctcgcgagctg
accttaaaagagcgcttgaaaggtgaaaaagacaccctaggcttgtacctgacaggccac
cctattgatgagtatgagggtgaagtgcggcgttttgcgcgccagcgtctggttgatttg
cggccatcccgtgatacgcaaactgttgctggcttaattatcagcttgcgggtaatgcgc
aacaaaaaaggcgatcgcatgggctttattgtccttgatgatcgctcggcgcgggttgag
gtgtctttgttttctgaagcttttaatcaggcgcaagcgctattgcaaactgatgcttta
gtggtggtggaaggcgaagtcagtcatgatgacttctcaggtggtttacgtgtacgggcc
aagcgtgtgatgagtcttgaagaggcacgcaccggtttagcagaaagtttacgcttgaat
gtgtctgtgacagacttaagtcgtgacagcttagcgcggctaaaagcattactattgcaa
tataaaggccaatgcccgctgacggtgaactataacggtggcagtgctaaagcactttta
gagttttccagtgactggcaaattgagccaacagacgatcttattcaggcattacgtgac
ctatttggtcgtgataacgtctttttgcattatcgttag
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