Denitrificimonas caeni: O6P33_07260
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Entry
O6P33_07260 CDS
T08709
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dce
Denitrificimonas caeni
Pathway
dce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P33_07260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dce03019
]
O6P33_07260
03009 Ribosome biogenesis [BR:
dce03009
]
O6P33_07260
Enzymes [BR:
dce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P33_07260
Messenger RNA biogenesis [BR:
dce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O6P33_07260
Ribosome biogenesis [BR:
dce03009
]
Prokaryotic type
rRNA helicases
O6P33_07260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
DeaD_dimer
LMNTD2_N
Motif
Other DBs
NCBI-ProteinID:
WBE26565
UniProt:
A0AAE9VQL5
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All DBs
Position
1530865..1532535
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AA seq
556 aa
AA seq
DB search
MQQDVGSFATLGLHPSVLAAITAVGYEEPSPIQIQSIPLIMAGHDMIGQAQTGTGKTAAF
ALPILSRIDAERREPQVLVLAPTRELALQVATSFESFAKQLKGVNVVAIYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLSRNGGMLSTVQFLVLDEADEMLKLGFMDDLEVIFNAMPDA
RQTVLFSATLPASIRGIAEKHLRNPQQVKIASKTQTVARIEQAHLMVHADQKINAVLRLL
EVEDFDAMIGFVRTKQATLDIAAALEAKGYKVAALNGDIAQNQRERVIDSLKDGRLNIVI
ATDVAARGLDVPRITHVFNIDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEILLPDAKVILQARVRRLTQDMAARVKDKDNHNTELLTQLTTDLDCNVEQL
ALALLAKVTEGQAFTLAGVEREQPVMAPRGRDDRNRRDGREGGGERRERRAPLALSEGKV
RCRTALGNRDGVAARNLLGAILNEGGLSRDAIGRIQIRESFSLVELPEEGLERLLGKLKD
TRVGGKPLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atccagcaagacgttggcagctttgccacactcggccttcacccttcagttctagcggca
attaccgcagtgggttacgaagagccatccccgattcagatacagtctattccattgatt
atggctggccacgatatgattggtcaggcacaaaccggtaccggtaaaaccgctgcgttt
gcgctgcctatattatcccgtattgatgctgagcgccgtgagccgcaagtgttggtgctg
gcacctacgcgtgagttggctttgcaagtagcaacttcgtttgaaagttttgctaagcag
ttaaaaggcgtcaatgttgtcgccatttacggcggtgcaccaatgggcccgcagcttaaa
gccattcgccagggtgcgcaggttattgttgccaccccagggcgtttagtggatcacctc
agtcgcaatggcggcatgttatccactgtgcagtttttggttttggatgaagcggacgag
atgctcaagctcggctttatggatgacttagaagttatctttaatgccatgcctgatgcg
cgtcaaacagtgttgttctcagcaacgctgccggcttctattcgtggtattgctgaaaag
catttgcgcaatccacagcaagttaaaattgccagcaaaacgcaaaccgttgcccgcatt
gagcaagcgcaccttatggtgcatgcggatcaaaaaattaatgcggtgttacgcttactc
gaagtcgaagactttgatgccatgattggttttgtgcgtactaagcaagctacgctggat
attgctgcagctttggaagccaaaggctacaaggttgctgcattgaacggcgacattgcc
cagaatcagcgtgagcgcgtaatcgactctttaaaagatggtcgcttaaatatcgtaatt
gcaaccgacgttgctgcacgtgggcttgatgtgccgcgtattactcacgtttttaacatt
gatatgccttacgatccagaatcctacgtgcaccgtattggtcgtacgggtcgtgccggt
cgtgatggtcgtgcactcttgttagtgacgccgcgtgagcgccgtatgctgcaagtgatt
gagcgtgtgactggacaaaaagttgcagaaattttattacccgatgctaaagtcattctg
caggctcgtgttcgtcgcctgacgcaagatatggcggcgcgggtaaaagataaagacaat
cacaatactgaattgttaactcaattaaccactgaccttgattgcaatgtcgagcaatta
gctttggctttgttggctaaggtaactgaaggtcaggcctttactttggccggtgttgag
cgcgagcagccggtaatggcgccacgcggtcgtgatgatcgcaatcgtcgcgatggccgt
gaaggtggtggtgaacgccgtgagcgtcgcgcgcccttagcgctgagtgaaggtaaagtc
cgttgccgtacagccttaggtaatcgtgacggtgttgccgcacgtaacttgcttggtgct
attttgaatgaaggcggtttgtcccgcgatgccattggccgtattcaaatccgtgaaagt
tttagtttggttgagttgccggaagagggtttggagcgcttactgggtaagctcaaagat
acccgcgttggtggcaagcccctgaaattacgccgctaccgtgaagactag
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