Denitrificimonas caeni: O6P33_09520
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Entry
O6P33_09520 CDS
T08709
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dce
Denitrificimonas caeni
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dce03019
]
O6P33_09520 (hrpA)
Enzymes [BR:
dce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O6P33_09520 (hrpA)
Messenger RNA biogenesis [BR:
dce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
O6P33_09520 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
AAA_22
AAA_19
AAA_25
NACHT
T2SSE
ABC_tran
FtsK_SpoIIIE
AAA_23
TsaE
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WBE24602
UniProt:
A0AAE9VNL1
LinkDB
All DBs
Position
complement(2010525..2014436)
Genome browser
AA seq
1303 aa
AA seq
DB search
MSKPAQHNPLFSQIKLAMSADQHRLRRRLQALLKKPAHDSALAQWQQDLDKSCQQVANRR
LSIPKIHYDDSLPIAERREDIKQALAKHQVLIIAGETGSGKTTQLPKLCLELGRGTQGLI
GHTQPRRLAARSVAARIAEEIASPLGELVGYQVRYEDQSHERTLIKLMTDGILLAETGRD
RFLQRYDTIIIDEAHERSLNIDFLLGYIKQLLPRRPDLKVIITSATIDLERFSKHFDDAP
IIEVSGRTYPVETWYRPLVASQDEDGNTLEEDLSVDQGILNGLLEIAEHERREKRLPGDV
LVFLPGEREIRECAEVLRKAQLKHTEILPLYARLSPSEQQKIFQSSAARKVILATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKIQRLPIEAVSRASANQRQGRCGRVEAGICIRLYS
EADFLGRPEFTDPEILRTNLAAVILQMLHLRLGAIEDFPFIEPPEGKAISDGFNVLQELS
AVDRDSKLTDLGKQLARLPIDPRVGRMLLAAAEQGSLREMLIVASALSIQDPRERPADKQ
QAADQAHAPWKDPDSDFAVLINIWRSFEEQRLALGSSGVRRWCRTHFLNYLRMREWRDAH
RQLTLICRELKLPFNEQPSDYAQLHKALLTGLLSQIGQKTEDNDFLGARQRRFHIHPSST
LGRKRPQWLMAAELVETTRLFARLVAKIEPEWAEQLAEHLLKRTYLEPHWEKRRGQVVAY
EQVSLYGLIIIGRRAVHYGPIDPVLSRETFIREGLVANEILSRARCLQANRELLKTLDKL
EAKARRRDILADEETLFAYYDQHIPADIYQTASFDRWYKRSSEKNPQLLLMTEADVLARD
ATEVTENQYPDTLAWQDIQLPLSYHFEPGHVRDGVTVTIPAPLLAQVPEALLQWLVPGLL
ATRCIAMVRNLPKAVRKNFVPVPDFIAAALEGMPFAQGSLTETLSQQLLRMTGVRVAEEL
WQQATEQLEDHLRMNIQVVDSKGKKLGEGRDLDELRSRFSAASQQALADLKQEKAVPKQV
KSDTFSIDEQSTHKVAGMAMTVYPALVDNAGEVQEGRFSTQQQADQEHRRALQRLLLQQV
AEPARYLRSRLPGLTEMALLYRDLGRIEALTEDILLASVDRCMLQGLKVLPRTAEAVAQL
AESKRGELVSVAEHLAKTVLLILQRWHEIKKRLKGRIDLSMAVAFNDVKAQLSGLLYAGF
VRDTPAQWLQEYPRYLKAIEQRLEKLPSQVQQDRVWTIELTGYVDKLKKRQEKHAQEGKY
DEALTQYRWMLEEYRVSLFAQQLGTKVPVSDKRLSKQWSQVSE
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaccagcacagcacaacccactgttttcccagattaaactcgccatgagcgct
gatcagcatcgcttacgccgccgcttgcaggcattgctgaaaaagcctgcgcatgacagc
gccttagcgcagtggcagcaggatctggataagtcctgccagcaggtggcgaatcgtcgc
ttaagcattccaaagattcactacgatgacagcttgccaattgccgagcgccgtgaagac
attaaacaggcgttagccaagcatcaggtgctgatcattgccggtgagacggggtctggt
aaaaccacgcagttgcctaagctgtgcttagaacttggacgcggcacgcaaggtttgatt
ggccatacgcagccacggcgtttggcggcgcgcagtgtggccgcgcgaattgctgaagaa
atcgccagcccgctgggagaactggtgggttatcaggtgcgctatgaagatcagagtcat
gaacgcaccctgattaaactcatgaccgatggtattttgctcgcggaaacaggacgtgat
cgttttctacagcgttacgatacgatcattattgatgaagcccatgagcgcagtcttaat
attgacttcttgctgggttatatcaaacagctgctaccgcgccgccctgatctaaaagtg
attatcacctcggcgaccattgatcttgagcgcttctctaagcattttgatgacgcaccg
attatcgaagtgtccggccgtacgtatccggtggaaacctggtatcgcccgttagtggcc
agccaagatgaagacggtaatacccttgaagaagacctcagtgttgatcagggtatcttg
aatggtttgctagaaatcgctgagcatgagcgccgtgaaaagcgtttgcccggtgatgtc
ttggtatttttacccggtgagcgcgagattcgtgaatgtgcggaagtgttgcgcaaagcc
cagctcaagcacactgagattttaccgctgtatgcacgtttatcacccagcgaacagcaa
aagattttccaaagcagcgcagcgcgtaaagtgattttggccaccaacgtcgcggaaact
tcgctcaccgtgccgggcattcgctatgtgattgatagtggtacggcacgcatcagtcgc
tacagttatcgcgcgaaaatccagcgtctaccgattgaagcggtttcgcgcgccagtgcc
aatcagcgccaaggccgttgtggacgagtggaggcggggatttgtattcgcctatacagc
gaggcagattttctaggccggcctgaatttactgatccggagattctgcgcaccaacttg
gccgcggtgattttgcagatgctgcatttgcgccttggtgcgattgaagactttcccttt
attgagccgccagaaggcaaggcgatcagtgatggctttaatgtgctgcaagagctcagc
gcggtggatcgcgacagcaagctgaccgacttaggtaagcagctggcgcgtttacccatt
gacccacgggtagggcgcatgttgctcgctgctgccgaacaaggcagtttgcgcgagatg
ctgattgtcgccagtgccttgtcgattcaagacccccgtgagcgcccagcggataaacaa
caagccgccgatcaagctcatgcaccctggaaagatcctgattccgactttgccgtactg
attaatatttggcgcagctttgaagagcagcgtttagcgctgggcagctctggggtgcgc
cgttggtgtcgcacgcattttctcaattatttacgcatgcgtgaatggcgcgatgcgcac
cgtcagctcaccttgatttgccgcgagcttaagctgccctttaacgagcagcccagtgat
tacgcgcaactgcataaagccttactgacaggcttgctcagtcaaatcgggcaaaaaact
gaagacaatgactttttaggtgcgcggcagcgacgttttcatattcacccttccagcacc
ttggggcgtaaacgtccgcagtggttgatggcggctgaattagtggaaaccacccgtttg
tttgcccgtttagtggcgaaaattgagccggagtgggccgagcaactggccgagcatcta
ctcaaacgcacttatttagagccgcactgggaaaagcgccgtgggcaagtggtggcttat
gagcaggtcagtttgtatggcttgattattatcggccgccgcgccgtgcattatgggccg
attgatccggttttgagccgagaaacctttattcgtgaaggcttagtggccaatgagata
ctgagccgtgcgcgctgcttacaggccaaccgcgagctcttaaaaaccctcgacaagttg
gaagccaaagcccgccgccgcgatattttggccgatgaagaaactctgtttgcttactac
gatcaacatattcctgcggatatttatcaaaccgccagttttgaccgttggtacaaacgc
agcagcgagaaaaacccacagctgttgctgatgactgaagccgatgtgctggcgcgcgat
gccaccgaagtgacggaaaaccaataccccgacaccttagcttggcaagatattcaactg
ccactcagttatcactttgaacctgggcatgtgcgtgatggcgttaccgttactattccg
gcacccttgctggcgcaagtgcctgaagccttgttgcagtggctcgtgcctggtttatta
gccacgcgctgcatcgccatggtgcgcaacttgcccaaggcagtgcgcaaaaactttgtg
ccggtacctgactttattgccgctgccttggaagggatgccctttgcccaaggttcgctc
accgaaacgcttagccagcaactgctgcgcatgactggtgtgcgggtcgcagaagagcta
tggcagcaagccactgagcagctcgaagatcacctgcgtatgaatatccaagtggttgac
agcaaaggtaaaaagctgggtgaaggccgagatttggatgagctgcgcagtcgtttttct
gctgccagtcaacaagctttagccgatcttaagcaggaaaaagccgtaccaaaacaggtt
aaaagcgatacctttagcattgatgaacaaagcacccataaagtcgcgggcatggcgatg
acggtctatcccgctttagtggataacgccggtgaagtacaagaagggcgcttttcaact
caacaacaagccgatcaagaacaccgccgcgctttgcaacgcttgctgctgcagcaggtg
gcagaaccggcgaggtatttgcgcagccgtttgcccggactgacggaaatggccttgttg
taccgtgacttaggcagaattgaagcgctcactgaagacattctgttagccagtgttgat
cgttgtatgttgcaggggctaaaggtgttgccgcgcactgcagaagcggtagcgcagttg
gctgagagtaaacgtggtgagttggtgtctgtggcggagcatttagccaaaactgtactg
ctgattttgcaacgttggcatgagattaaaaaacgcctaaaaggacgcattgacctgtcc
atggcggttgccttcaatgatgttaaagcgcagttgagtggtttgctctatgccggcttt
gtccgtgatacaccagcacagtggctgcaggaatacccgcgttatctaaaagccattgag
cagcgtttggaaaagctccccagtcaagtgcaacaagatcgggtctggaccattgagtta
accggttatgtcgataagcttaaaaaacgtcaagaaaaacatgcgcaagaaggcaaatac
gatgaggccttaactcagtaccgctggatgctcgaagagtaccgcgtgtctttatttgcc
cagcaattgggcactaaggtgccggtgtcggataagcgcttaagtaaacaatggtcacag
gtgagtgagtga
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