Denitrificimonas caeni: O6P33_10825
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Entry
O6P33_10825 CDS
T08709
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dce
Denitrificimonas caeni
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dce03009
]
O6P33_10825 (rlmD)
Enzymes [BR:
dce01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
O6P33_10825 (rlmD)
Ribosome biogenesis [BR:
dce03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
O6P33_10825 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
MTS
Methyltransf_11
Cons_hypoth95
Methyltransf_15
RrnaAD
Ubie_methyltran
Methyltransf_23
TRM5-TYW2_MTfase
DREV
Methyltransf_12
Methyltr_RsmB-F
UPF0020
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
WBE24845
UniProt:
A0AAE9VR68
LinkDB
All DBs
Position
complement(2329461..2330813)
Genome browser
AA seq
450 aa
AA seq
DB search
MSRSKAPKSLRFQPAGGVRNTLPAGKKQVLSIERLSHDGRGIAFLDGRTWFVSGALPGEQ
VQAEVLAARSKVVEAQSLVIQSSSPERITPECQWAGRCGGCTLQHISHAQQIELKHANLV
EQFSREGLTPVTWAEPLVGPAFAYRRRSRVAVRYDVKQKHVQVGFRGPASNAIVEVASCI
ILVPELQPVFAGLSALFNSFQQPQVLGHVELFSGHNTALLLRHTQALHAADLAKLRAYCA
EHHVQLWLQGIGEPQPDQAGATLGYALTQYAVEIAYQPGDFVQVNAQMNEAMIAQALKWL
APQSGARVLDLFCGLGNFALPLAQQVEEVVAVEGVESMLVRARANAEANQLSNVHFYHAD
LSMPLRKAPWAKQGFAAALLDPPREGAQMTVTDLAQLKVPRIVYVSCNPATLARDAAVLL
AKGYRLEKAGVLDMFAQTGHAEAMALLVKP
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcaaaagcacccaagtcgttacggtttcaaccagcgggaggtgtgcgtaac
accttgcctgcgggtaaaaaacaagtgttgagcattgaacgcttatcgcacgatggccgt
ggcattgcttttttagacgggcgcacttggtttgtcagcggcgctttacccggtgagcag
gtgcaagccgaagtgttggccgcgcgcagcaaggtggttgaggcgcaaagcttagtgatt
cagagcagtagcccggagcgtattactcctgagtgccagtgggccgggcgctgtggcggc
tgtacgttgcagcatattagccatgcacagcaaattgagctcaagcacgctaatttagtt
gagcagttcagtcgcgaggggctgaccccggtaacttgggcagaacctttagtggggcca
gcatttgcctatcgccgccgcagtcgtgttgctgtgcgttatgacgttaaacaaaagcat
gtgcaggtgggctttcgcggcccggccagtaatgccattgttgaagtggccagttgcatt
attttagtccctgagttgcagccggtatttgcagggctaagtgctttatttaatagtttt
caacagccgcaagtgttaggtcatgtggagctattcagtggccacaatacggcattgttg
ctgcgtcatacccaagcgctgcatgctgcggatttagccaagctacgcgcttactgtgcc
gagcaccatgtgcaattatggctgcaaggcattggtgagccacagccagatcaagccgga
gccaccttgggttatgcgttaacccagtacgctgtcgaaattgcttatcagcccggtgat
tttgttcaggtcaatgcgcaaatgaatgaggcgatgatcgcccaagcgctaaaatggtta
gcgccacagtcgggtgctcgcgtgctggatttgttttgtggattgggtaactttgccttg
ccgctggcgcaacaggttgaggaggtagtggcggtggagggtgtcgagtcgatgctggtg
cgtgcacgggccaatgctgaagccaatcagctgagcaatgtgcacttttaccatgccgac
ttgtctatgccgttacgcaaagcgccttgggccaaacaaggcttcgctgcagcattgctg
gatccgcctcgcgaaggtgcacagatgaccgtgactgatttggcgcaattaaaagtgccg
cgcattgtctatgtttcctgtaaccccgccacactggcgcgggatgcggcggttttgctt
gccaagggctatcgtttagaaaaagccggtgtgctggatatgtttgcgcaaacagggcat
gccgaagctatggcgctgttggtcaagccgtaa
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