Denitrificimonas caeni: O6P33_11610
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Entry
O6P33_11610 CDS
T08709
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
dce
Denitrificimonas caeni
Pathway
dce02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
O6P33_11610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
dce02022
]
O6P33_11610
02035 Bacterial motility proteins [BR:
dce02035
]
O6P33_11610
Two-component system [BR:
dce02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
O6P33_11610
Bacterial motility proteins [BR:
dce02035
]
Pilus system
Twitching motility proteins
O6P33_11610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
HTH_50
Mg_chelatase
HTH_30
AAA_19
AAA_16
HTH_28
HTH_23
VpsR
Motif
Other DBs
NCBI-ProteinID:
WBE24992
LinkDB
All DBs
Position
2489907..2491298
Genome browser
AA seq
463 aa
AA seq
DB search
MSQQTALIIDDEPDIRELLEITLGRMNLHTRSACNVKEAYQWLERESFDLCLTDMRLPDG
TGLDIIKFVQKNHSQTPIAMITAYGCVDTATQALKAGAFDFITKPVDLVRLRELVSSALR
LRKEPTAPAPVTEGPLLGSSLPMQKLRSQIAKLARSQAPVYISGESGSGKELVARQIHQQ
GGRAQQPFIPVNCGAIPAELMESEFFGHKKGSFSGATEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRALQEKAIRPVGSQQEQLVDVRILSATHKNLAHEVAAERFRQDLYYRLNVI
ELLVPPLRERPEDIEQLSNSILARLSADGLPVRLHPDALAKLQGYIFSGNVRELENILER
AYTLAEGEFIHPHDLKTNHMPSAAPQPTVAAKAQAAPQHASSNDLSQHALESIDNLEEHL
EEVERKLITQALEETRWNRTAAAERLGLTFRSLRYRLKKLGID
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaacaaacagccctaatcattgatgacgaacctgatattcgtgagcttttggag
atcactcttggccgcatgaacctgcacacccgcagcgcttgcaatgtcaaagaggcttac
caatggctcgaacgtgaatctttcgatctttgtttaacggacatgcgcttaccagacggc
acgggtctagacatcattaagtttgtgcaaaaaaaccacagccaaacgcccattgccatg
atcaccgcttacggttgcgtggacacggccacccaagctttaaaagccggagcctttgat
tttattaccaagcctgtggaccttgtgcgtttacgggaactggtcagcagcgccttgcgt
ttgcgcaaagaacctaccgcgccagcgccagtgactgaaggcccactcttaggcagttcg
ttaccgatgcaaaaactgcgcagccaaattgctaaactggcccgcagccaagccccggtc
tacatcagcggtgagtcaggcagtggtaaagagttggtcgcacggcaaatccaccagcaa
ggtgggcgcgcacaacagccctttattccagtcaactgcggtgcgattcctgcagaactg
atggaaagtgaattttttggccataaaaaaggcagttttagtggtgccacagaggataaa
ccggggttatttcaagctgcccatggcgggactttgtttctcgatgaagtggcggacttg
cccttggccatgcaagttaaattgctgcgcgctttacaagaaaaagccattcgccctgtg
ggcagtcagcaagagcaattggttgatgtacgcattttaagcgccacccataaaaacctt
gcccatgaagttgctgccgagcgttttcgtcaagacttatactaccgcctcaatgtgatt
gagctgttagtaccgccgctgcgtgagcgtccagaagacattgagcaactgagcaattct
attttagcgcgcttaagtgccgatggtttacccgtgcgcctacacccagatgccttagcc
aaactgcaaggctatattttttccggcaacgtgcgtgaactggaaaatattttggagcgg
gcctacaccttagctgagggtgagtttattcatccccatgatttaaaaaccaaccacatg
cccagcgcggcaccgcaaccaacagtcgcagcaaaagcgcaagcagccccacagcacgcc
tctagtaacgaccttagccagcacgctctggaaagcatcgataaccttgaagagcactta
gaagaggttgagcgcaaactgatcactcaagcccttgaagaaacccgctggaaccgcaca
gctgcagcagagcgtctgggcctaaccttccgttcattgcgctaccgtttaaaaaagctg
ggcattgattaa
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