Denitrificimonas caeni: O6P33_12360
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Entry
O6P33_12360 CDS
T08709
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dce
Denitrificimonas caeni
Pathway
dce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P33_12360 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dce03019
]
O6P33_12360 (rnr)
03016 Transfer RNA biogenesis [BR:
dce03016
]
O6P33_12360 (rnr)
Enzymes [BR:
dce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O6P33_12360 (rnr)
Messenger RNA biogenesis [BR:
dce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O6P33_12360 (rnr)
Transfer RNA biogenesis [BR:
dce03016
]
Prokaryotic type
tRNA degradation factors
O6P33_12360 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
WBE26614
UniProt:
A0AAE9VRX3
LinkDB
All DBs
Position
complement(2648885..2651341)
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AA seq
818 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQHLAERGAPATREQLAVEFALTSEEDLEALR
RRLRAMERDAQVVYTRRGAYAPVDKLDLVVGRVSGHRDGFGFLIPDDGGDDLFLSPTQMR
LVFDGDRVLGRVVGFDKRGRREGAIAEVVLRAHESIVGRYNEENGIGFVLPDNKKMQQEV
LISPGRAGGAQVGQLVEVAITHWPTARFQAQGNIVEVLGDYMAPGMEIEVALRNYDIPHI
WPDAVVKEAKRFKAEVEEKDKEKRVDLRHLPFVTIDGADARDFDDAVYCEPRSGSAGDVV
TGGWRLYVAIADVSHYVKVDSALDHEAHLRGNSVYFPERVIPMLPEELSNGLCSLNPNVD
RLAMVCEIALGHSGKMIGYQFYEAIINSHARLTYDVVSAMLERPRSAEGKQYLTEYAAVA
PHVKDLYAVYKALQKQRHNRGAIDFETRETQIVFGEDRKIAEILPTERNDAHKLIEECML
CANVAMANFLEDHDLPGLYRVHDGPPAEKLEKLRGFLTELGLTLNRGKGDPTPKDYLALL
ETVRDRADFQLIQTVMLRSLSQAVYSPDNNGHFGLNYEAYTHFTSPIRRYADLLNHRAIR
HVIRSRQKTEHVQRVGARSLPKAQVYPYDLPELEEIGVEVSMTERRADEATRDVVTWLKC
EFMLDRVGETFEGVITSVTGFGIFVELVDIYVEGLVHVTALPGDYYQFDAVHHRLSGERS
GRSFRLGDTVEVIVARVDLDERKIDFEMSSADADVGKRPHAKGKTARDAAKKDSAKTSAA
GAKKGAVDKDAAAPKGKAKSKVRKRKVVSKSTKAGHYE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atagccgattggcaatccctcgacccagaggccgctcgtgaagcggaaaaatatgacaac
ccaattccaagccgtgaattgattttacagcacctagctgagcgtggagcacctgctacc
cgtgaacagttggcggttgaatttgcattaacctcggaagaggatcttgaagcattgcgt
cgtcgcttacgtgcgatggagcgtgatgcgcaagtggtgtatacccgccgcggtgcttat
gcacctgtggataagctagacctagtggtgggccgcgtcagtggtcaccgtgatggtttt
ggttttttaatccctgacgatggcggcgatgatttatttttaagccccacgcaaatgcgt
ttagtctttgatggcgaccgtgttttagggcgtgttgtaggttttgataagcgtggccgc
cgtgaaggtgccattgctgaagtggtgctgcgtgcccacgaatctattgtagggcgctat
aacgaagaaaatggcattggctttgtcctacccgacaataaaaaaatgcagcaggaagtc
ttgatcagtccgggtcgtgccggtggtgcgcaagtggggcagttggttgaagtggcaatt
acccactggccaaccgcacgtttccaagcgcagggtaatattgtcgaagtgttgggcgac
tatatggcgccgggcatggaaattgaagtggccctgcgtaactatgatatcccccacatc
tggccggatgctgtggttaaagaagccaagcgctttaaagctgaagtggaagaaaaagac
aaagaaaagcgtgtggatctacgccatttgccgtttgttaccattgacggcgcagatgct
cgcgactttgatgatgcggtgtattgcgaaccgcgcagcggcagtgctggtgatgtggtt
accggtggttggcgtttgtatgtggccattgccgatgtttcgcactatgtaaaagtggat
tctgcgctggatcatgaagcacatttacgtggtaattcagtgtatttccccgagcgggtg
attccgatgttgccagaggagctatccaacggtctgtgctcgttaaacccgaatgttgat
cgtttggcgatggtctgtgaaattgctttgggtcactccgggaaaatgattggctaccag
ttttatgaggccatcattaattcccacgctcgcttaacttacgacgtggtcagtgccatg
ttggagcgtccgcgcagcgctgaaggcaagcagtatctgactgagtatgctgccgttgca
ccccatgtaaaagatctttacgcggtgtacaaggcgttacagaagcagcgtcataaccgt
ggtgcgattgatttcgaaacccgcgaaactcagattgtgtttggtgaagaccgtaaaatt
gctgagattttacccaccgagcgcaatgatgcacacaagctgattgaagagtgcatgttg
tgcgccaacgtggctatggccaactttttagaagatcatgatttgcccggtctgtaccgt
gtgcacgatggtccgccggcagaaaagctagagaagttgcgtggttttttaactgagctg
ggtttaaccctaaatcgcggtaaaggcgatccaactcccaaagactatttggcgctgttg
gaaactgtacgtgaccgtgctgattttcagttgattcaaacggtaatgttgcgctcgtta
agtcaggcggtgtacagccctgataataacggtcactttggtctgaactatgaggcctac
acgcactttacttcaccgattcgccgctatgcagacttgctcaaccaccgtgccattcgc
catgtgattcgttcacggcagaaaactgagcatgtgcagcgagttggtgcgcgtagccta
ccaaaagcgcaagtctatccttatgatttgccagagctcgaagagattggcgtcgaagta
tccatgaccgagcgccgtgctgatgaagccacccgtgatgtggtgacttggctcaagtgc
gagtttatgttggatcgggttggtgaaacctttgagggtgtgattacctcggtgacaggc
tttggtatcttcgttgagctggttgatatttatgtggaaggcttggtgcatgtcactgct
ttgccaggtgattattaccagtttgatgcagtgcatcaccgtttaagtggtgagcgcagt
ggacgcagcttccgccttggcgataccgtcgaagtgatagtggcgcgggttgatttagac
gagcgcaaaattgatttcgaaatgagctcggctgatgcggatgtgggcaagcgtccccat
gctaaaggcaaaacggccagagatgcggcgaaaaaagacagtgcgaaaacttccgcagca
ggcgctaaaaaaggtgctgtagataaagatgctgccgcgccaaaaggtaaagcaaaaagc
aaagtgcgtaagcgcaaagtcgtcagcaaatccaccaaggctgggcattatgaatga
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