Deinococcus soli (ex Cha et al. 2016): SY84_05565
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Entry
SY84_05565 CDS
T04233
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
dch
Deinococcus soli (ex Cha et al. 2016)
Pathway
dch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SY84_05565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dch03021
]
SY84_05565
03400 DNA repair and recombination proteins [BR:
dch03400
]
SY84_05565
Enzymes [BR:
dch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SY84_05565
Transcription machinery [BR:
dch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SY84_05565
DNA repair and recombination proteins [BR:
dch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SY84_05565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_5
RNA_pol_L_2
IMS_HHH
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AKH16609
UniProt:
A0A0F7JML3
LinkDB
All DBs
Position
complement(1127190..1128191)
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AA seq
333 aa
AA seq
DB search
MDQKRPQLKARVDGDYGEFVLEPLTRGYGVTIGNPIRRILMSSIPGTAVTSVYIEDVLHE
FSTIPGVKEDVIQIILNLKELVVKFHATGPKTLTLRAQGEGVVKASAFEVPSDAEIVNPD
LVIANLAEDGKLVMEVRIEEGEGYVPADKHATKDRINSIPVDAMFSPVRRVAYHVENTRV
GQQTDLDRLILRVWTDGSTSPQDTLDKAVEILREELTVFGNVETLPAAAPEYQQPVYTPA
PTAPNVYDLPPSTASLNLNPGDYPAEMDSPRVTLEGLGLTTRVLHSLKEEGIDSVDALCA
LSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
gtggatcaaaagcgccctcaactcaaagcccgcgtggacggcgactacggcgagttcgtc
ctggaaccgctcacccgcggctacggcgtcaccatcgggaaccccatccggcgcatcctg
atgtcctccatccccggtaccgcagtcacgagcgtgtacatcgaggacgtcctgcatgag
ttctccaccatccccggcgtcaaggaagacgtcatccagatcatcctgaacctcaaggaa
ctcgtggtgaaattccacgcgaccggccccaagaccctcaccctgcgcgcgcagggcgaa
ggcgtcgtcaaggccagcgccttcgaggtccccagcgacgccgagatcgtcaaccctgac
ctggtcatcgccaacctcgccgaggacggcaaactggtcatggaagtgcgcatcgaggag
ggcgaaggctacgtccccgcggacaagcacgccaccaaagaccgcatcaactcgatcccc
gtcgacgcgatgttctcccccgtgcgccgcgtggcgtaccatgtcgagaacacccgcgtg
ggccagcagactgacctggaccgcctgatcctgcgcgtctggaccgacggcagcaccagc
ccccaggacaccctggacaaggctgttgagatcctgcgtgaggaactcacggtgttcggc
aacgtggagaccctccccgccgccgcgcccgagtaccagcagcccgtctacacccccgcg
cccaccgcgccgaacgtgtacgacctgccgcccagcaccgccagcctgaacctgaacccc
ggcgactaccccgccgagatggactccccccgcgtgaccctcgagggtctgggcctcacc
acccgcgtgctgcactccctgaaggaagaaggcatcgacagcgtggacgccctgtgcgcc
ctgtccgaccgtgacctgaaaaaggtccccggcatcggcgagcgcagcctcgacgagatc
aagcagcaactcgcccagttcggcctcgccctacgcgactga
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