Deinococcus soli (ex Cha et al. 2016): SY84_09880
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Entry
SY84_09880 CDS
T04233
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dch
Deinococcus soli (ex Cha et al. 2016)
Brite
KEGG Orthology (KO) [BR:
dch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dch03032
]
SY84_09880
03400 DNA repair and recombination proteins [BR:
dch03400
]
SY84_09880
Enzymes [BR:
dch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SY84_09880
DNA replication proteins [BR:
dch03032
]
Prokaryotic type
DNA Topoisomerases
SY84_09880
DNA repair and recombination proteins [BR:
dch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SY84_09880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AKH17295
UniProt:
A0A0F7JRP8
LinkDB
All DBs
Position
1996392..1997429
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AA seq
345 aa
AA seq
DB search
MTSRTELLAGEYLRREGSDPKKFRYFWPDGTPYKDRAGIERIARLAVPPAYGDVYVSPDP
DAELQAFGRDAAGRLQYRYHPDFVQAGALKKWQRLTRFAGALGTLKTVTAGDLRAQGLPP
RKVTALMTRLLHVARFRVGSDIYAQQHKTYGLSTLRQRHVQVGGNIVTFHFKGKHGITQH
KATTDRTLATNITRLLDLPGPWLFQTTDAEGARRRVRSGELNAYLKEVIGPFTAKDFRTW
GGTLLAAEYLAEAGVADTEKQARQTLVDCVKYVAADLGNTPAVTRSSYICPVIFDRYLEG
KILDDYEPRATKGESDLDGLTRSEAALKRLLESEKTLRTRRKKAA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgacctcccgcaccgaactcctcgccggggagtacctgcgccgcgaaggcagcgacccc
aaaaaattcaggtacttctggccggacggcacgccatacaaggacagggcgggcatcgaa
cgcatcgccaggctcgccgtcccccccgcctacggggacgtgtacgtcagccccgacccg
gacgccgaactccaggccttcggccgcgacgccgccggacgcctccagtaccgctaccac
ccggacttcgtgcaggcgggcgcgctgaaaaaatggcagcgcctcacccgcttcgccggg
gcgctcggcaccctcaagaccgtcaccgccggtgacctgcgcgcccagggcctgcccccc
cgcaaggtcacggccctcatgacccgcctgctgcacgtcgcccgcttccgcgtcggcagc
gacatctacgcccagcagcacaagacctacggcctcagcaccctgcgccagcggcacgta
caggtgggcgggaacatcgtcaccttccacttcaagggcaagcacggcatcacgcagcac
aaggccaccaccgaccgcaccctcgccacgaacatcacccgcctgctcgacctccccggc
ccctggctgttccagaccacagatgccgaaggtgcgcgtaggcgcgtccgcagcggcgaa
ctcaacgcgtacctcaaggaagtcatcggccccttcaccgccaaagacttccgcacctgg
ggcggcaccctcctcgccgccgaatacctcgccgaagcgggcgtcgccgacaccgaaaaa
caggcccggcagaccctcgtcgactgcgtcaaatacgtcgccgccgacctgggcaacacg
cccgccgtcacccgcagcagctacatctgccccgtcatcttcgaccgttacctggaaggc
aagatcctcgacgactacgaaccccgcgccacgaaaggcgagagcgacctcgacggcctg
acccgcagcgaagccgccctgaaacgcctgctggaaagcgagaagaccctcaggacacgg
cggaagaaagcggcgtaa
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