Dolichospermum compactum: NIES806_04870
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Entry
NIES806_04870 CDS
T10125
Name
(GenBank) TrmA family RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dcm Dolichospermum compactum
Brite
KEGG Orthology (KO) [BR:
dcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcm03009
]
NIES806_04870
Enzymes [BR:
dcm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NIES806_04870
Ribosome biogenesis [BR:
dcm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NIES806_04870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
Methyltransf_15
PrmA
RrnaAD
Methyltransf_11
DOT1
TRM5-TYW2_MTfase
Methyltransf_32
Methyltransf_4
Methyltransf_12
DUF1284
TPMT
Motif
Other DBs
NCBI-ProteinID:
BAZ84301
UniProt:
A0A1Z4UYE7
LinkDB
All DBs
Position
complement(535814..537196)
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AA seq
460 aa
AA seq
DB search
MTNIMWRQDEIIELEITDLSDTGDGVGRFEQRVVFVPDTVPGDRLLVKLFNVKPKYAYGQ
VQELLQASPQRVRPSCIVADKCGGCQWQHINYDYQLIAKHNQVTQALERIGGFVNPPIDP
VLVSAASFGYRNKVTYPIGRSATGHVQAGYYHKGTHKLINLNQCPVQDQRLNPLLAEVKL
DIEKQGWSIYDETRHKGLIRHLGLRIGRRTGEMLLTLVVKDWNLPGIETQAQQWLQRYPE
LVGVSLNRNSDRTNAIFGSETRCLAGTPHLQEKFAGLDFQIGPDTFFQVYTETAEALLAV
IQSELNLQGHEILIDAYCGIGTLTLPLAKQARHITGLELQSTAVQQATINAKENGINNVT
FQVGAVEKILQNLEIIPDVVLLDPPRKGCEANVIKTLRNLKPSRIVYVSCKVATLARDLK
LLCEDGLYKLTRVQPADFFPQTAHVEAAAFLVLSDNDQNS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgactaatataatgtggcgacaagatgaaattattgaactggaaattactgatttaagc
gacacgggtgatggtgtgggacgctttgagcagcgggtggtttttgttcctgatactgtt
ccgggcgatcgcctacttgtcaaactattcaatgttaagccaaaatatgcctatggtcag
gtgcaggaattattgcaagcctcacctcaacgggtgcgtcccagttgtattgtcgccgat
aaatgcggtggttgtcagtggcaacatattaattatgactaccaattaatcgccaaacac
aatcaagtaactcaagccttagaaagaattggcggttttgtgaatccacctatagatcca
gtcttagtatctgctgcatcctttggctatcgcaacaaagtcacctatcctatcggtagg
tcagccacaggtcatgtccaagctggatattatcacaaaggtactcataaattaatcaac
ttgaatcaatgccccgtccaagaccagcgattaaatcccctattagctgaagtaaaattg
gatattgaaaagcaaggttggtcaatttatgacgaaacccgacataaaggcttaattcgc
catttgggtttacgcattggtcgtcgcacaggagaaatgctgctaactttggtggtcaaa
gattggaatttaccaggaattgaaacccaagcccagcaatggttacagcgttatcctgag
ttagttggtgtgtcacttaaccgcaatagcgatcgcacaaatgctatatttggatcagaa
acccgttgtttagctggaactccccatctccaagaaaaattcgctggactggattttcaa
atcggaccagatacatttttccaagtgtacacagaaacagccgaagcactcctagccgta
attcagtcagaactgaacctacaagggcatgaaatcctcattgatgcctactgtggtata
gggacattaactttacccctagccaaacaagcacggcacatcacaggtttagaactgcaa
tcaacagcagtacaacaagcaactatcaatgccaaagaaaatggcatcaataatgtcaca
ttccaagtaggcgcagtcgaaaagattctccagaatttggaaattatcccagatgtcgtc
ttacttgatccgccccgcaaaggatgtgaagctaacgttatcaaaacattaagaaacctg
aaaccatctcgaattgtttacgtcagttgtaaagtagccaccctcgcccgtgacctcaaa
ttactttgcgaagatgggctatataaactcacaagagtgcaacctgccgacttttttcct
caaactgctcatgtagaagcagccgcttttctagtgctatcggacaatgatcagaatagt
taa
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