Dolichospermum compactum: NIES806_13910
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Entry
NIES806_13910 CDS
T10125
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dcm Dolichospermum compactum
Pathway
dcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES806_13910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcm03019
]
NIES806_13910
03400 DNA repair and recombination proteins [BR:
dcm03400
]
NIES806_13910
Enzymes [BR:
dcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES806_13910
Messenger RNA biogenesis [BR:
dcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES806_13910
DNA repair and recombination proteins [BR:
dcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES806_13910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
GerE
HTH_38
TnsD
HTH_24
HTH_11
Motif
Other DBs
NCBI-ProteinID:
BAZ85191
UniProt:
A0A1Z4V0W8
LinkDB
All DBs
Position
1420356..1422545
Genome browser
AA seq
729 aa
AA seq
DB search
MLQYPDLEKYLKHHFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPG
LTVVVSPLIALMQDQVEALRTNNISATFLNSSLNAYKVRSREEAIMNGKIKLLYVAPERL
VSDRFLPLLDVVKEKVGISTFAIDEAHCVSEWGHDFRPEYRQLRLLRKRYPDVPTVALTA
TATDRVRADIIEQLGLKQPSIHIASFNRQNLYYEVRAKSNRAYAELLEIVRENEGSGIIY
CLTRKKVDEITLKLQNDKISVLPYHAGLSDDERSKNQTRFIRDDVRVMVATVAFGMGINK
PDVRFVVHSDLPRNLESYYQESGRAGRDDEPSKCTLFFNYGDIKTIEWSINQKTDPQEQL
IAKQQLRQVIDYAEGTDCRRTIQLSYFGERFPGNCGNCDNCLYPKPVQDWTIEAMKFLSC
VARCKERFGMLHIIDVLRGGKNQRIIVNKHDQLSTYGIGKDKTVDEWRMLCRSLLHQGLI
EQTADGYSVLKLNALSWEVMRKQRTVSIAVPTVKKMTWEEGSGKSADVEVLMQKLRSLRK
QLADEQAVPPYVIFHDSTLKLMAQSQPKTLDEFGNLSGVGSHKLSQYGERFLAEIQTYRQ
EQGLPEKTINRGNYSSFPNSPSDTELTTLELYNQGLSIEEIAQKRNIRPTTIIRHLSDLI
EKKQSLDLSKLVPLERQKRIWNVLEIVGDIALTPIRENLGESYSFDEIRLVRAKWRREKQ
KSIKDDIDF
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagtacccagacctagaaaaatatttaaaacatcattttggttatgatcaattt
cgccctggacaacggcaaattatcgaagatgcgttagaaaatcgtgatttaatggtagtc
atgcccacaggtgggggtaaatctctatgctttcaattaccggcacttttgaaacccggt
ttaacagtggtagtctcacccttgatagctttaatgcaagatcaagtagaagcgctgcga
actaataacatttctgccacatttctcaatagtagtctcaacgcctataaagttcgctcc
cgtgaagaagcgatcatgaatggtaaaataaaattactttatgtcgccccagaacgcctt
gttagtgaccgatttctcccccttttagatgtagttaaagaaaaagtcgggatttccacc
tttgctattgatgaagcccattgtgtctctgaatgggggcatgatttccgcccagaatat
cggcaattaagattactccgaaaacgttatcctgatgtgcctacagttgccctcacagct
accgctacagatagagtccgggcggatattattgaacaattaggattaaaacaaccaagt
attcatattgctagttttaaccgccaaaatctttattatgaagtccgggctaaaagtaac
cgtgcttacgccgaattattagaaatagttagagaaaatgaaggttcgggaattatctat
tgtttaactcgcaaaaaagttgatgaaataactttaaaactccaaaatgataagatttct
gttttgccttatcatgctggtttaagtgatgatgaaagatcaaaaaatcaaactcggttt
attcgggatgatgtgcgagtcatggtggctactgttgcctttggcatggggattaataaa
cctgatgtgcggtttgtagtgcattctgatttaccccgaaatttggagagttactatcaa
gaatcaggacgagcaggtagagatgatgaaccttctaaatgtacattatttttcaattat
ggtgatattaaaactatagaatggagtattaatcaaaaaaccgatcctcaagaacaatta
atagctaaacagcaactaagacaggtaattgattatgcagaagggacagattgtagacgc
acaattcaattaagttattttggggaaagatttcccggcaattgcggaaattgtgataat
tgtctttatcccaaacctgttcaagattggacaattgaagccatgaaatttttatcttgt
gtggctaggtgtaaagaaagatttggaatgctgcatattattgatgttttgcgaggtgga
aaaaatcagagaattattgttaataaacatgatcaactttctacctatggaattggcaaa
gataaaacagtagatgaatggcgaatgttatgtagatccttattacatcaaggattaata
gaacaaacggctgatggttattcagttttaaaactaaatgctttaagctgggaagtcatg
cgaaaacaacgcacagtttccattgctgttcctacagtcaaaaagatgacttgggaagag
ggaagtggcaaatccgcagatgtggaagttctcatgcaaaaattgcgatcgcttcgtaaa
caactcgcagacgaacaagccgtgccaccctacgttatcttccatgattctaccttaaaa
ttaatggcacaaagccaacccaaaaccttagatgaatttggcaatctctccggcgttggt
agccataaattatctcagtatggcgaaagattcttagcagaaattcaaacctatcgtcaa
gaacaaggtttaccagaaaagacaattaatcgcgggaattattcatcctttcctaactca
ccctcagatacagaattaacaacattagaattatataaccagggattgagtattgaagaa
atcgcccaaaaacgcaatatccgccccactacaattatccgtcatctctcagatttaatt
gagaaaaaacaatctttagacttgagtaaattagtccccctagaacgtcagaaaagaatc
tggaacgtcttggaaattgtgggtgatattgccctcacacccattcgagaaaatttaggt
gagagctacagctttgatgaaattcgtttagttagagcaaaatggcgacgggaaaaacag
aaatctattaaagatgatattgacttttag
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