Dolichospermum compactum: NIES806_22000
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Entry
NIES806_22000 CDS
T10125
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dcm Dolichospermum compactum
Brite
KEGG Orthology (KO) [BR:
dcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcm03016
]
NIES806_22000
Enzymes [BR:
dcm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIES806_22000
Transfer RNA biogenesis [BR:
dcm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIES806_22000
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
CSD_RNase_II
HTH_RNase_II
KhtT_N
Arnt_C
Motif
Other DBs
NCBI-ProteinID:
BAZ85995
UniProt:
A0A1Z4V3X3
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All DBs
Position
complement(2299012..2301072)
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AA seq
686 aa
AA seq
DB search
MDKGTLVEFRVQSDRRLGVVDRPDGKTRWFVVDERGQSHSLAPRQFTYTVNGQTYKPGEI
ADFLSQVQTYLDPSSLEIAWELLIEDGETVTPSQLANILFSESTLPQCYAAHCLLSEDKL
YFKQKGDAYEPRSMAQVAERKHQIEVESQKAKGQQEFLARVEQALQGQVVEWQRLDRQRL
EAIEKYATLLADVVMLKVNYDSLARACPPSAPVLETMNMLGRSATPQAAFQLLIDLGWWT
SHENLFLRRSSISVQFPQKVLEVAQKRLDFPPTDLDTNRLDLTHLKVYTIDDESTTEIDD
GLSWEILPDGKERLWVHIADPTRLLMPDDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLVQGKVCCALSFGVILDEVGAVEDYCIHAGLIKPTYRLTYEDVDEMLELGVQAEPEIE
AIANWAKIRKNWRYGQGAISINMPEAMIKVKDDNINIDVLDDSSSRQLVAEMMILAGEVA
ARYGQTHNIPLPFRGQPQPELPPDEELLQLPAGFVRSCAMRRCMPKSEMSITPVRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEGLPFSAEQLKEVMMTVMSTTQEATMVERQT
NRYYALEYLRRHPEQVWQVTVLMWLREDSNLALILLEDLGLQLPMSFRRSVNLGENLLVK
VSLADPQKDMIHFQEIMYQEAQSITN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggataaggggacgttagttgaatttagggttcaaagcgatcgccgtctaggagtggta
gatcgtccagacggtaaaactcgttggtttgtagtagatgaacggggtcaatcccacagc
ctcgcacctcgccaatttacctacacagtgaatggacaaacctataaaccaggggaaatc
gctgacttcttaagtcaagtccaaacttatctagacccatcaagtctagaaatagcgtgg
gaattactcattgaagatggagaaactgtcactcccagccaattggcaaatatattattt
tcggaatccacgctaccccagtgttatgcagcccattgtttgttatcggaggataaactc
tatttcaaacaaaaaggagatgcttatgaaccccgcagcatggcacaagtagcagaacgc
aaacaccagattgaagtagaatcccaaaaagccaagggacagcaggaatttttagcccgt
gtagaacaggcacttcagggacaagtggtagaatggcaaagactggatcgccaacgctta
gaagccatagaaaagtatgcgactttgttggctgatgttgtcatgctcaaggtaaattac
gactctttagctcgtgcttgtccgccttcagccccagtattagaaactatgaatatgctg
ggacgttctgctacgccccaggcggcatttcaacttttgatagatttgggttggtggact
tcccatgagaatctgtttctgcgccgttcatcaatctccgttcaatttccgcaaaaggta
ttagaagtggcgcaaaaacgtttggattttcctcctacagatttggacacaaaccgtctt
gatcttacacatctcaaggtgtacaccattgatgatgaaagcacgacggaaatagacgat
ggtttgagttgggagatattaccagatggtaaggaacggttatgggtacatattgctgac
ccgacccggttattaatgccagatgatgagttggatttggaagccagaaaacgggggagt
acggtttatttaccgacggggatgattcctatgtttccagaggtgttggctacaggtccc
atgagtttggtacaggggaaggtctgttgcgccctcagctttggggtgattttggatgaa
gttggggcggttgaagattattgtatccacgctggtttaatcaagcctacctatcgtctc
acctatgaggatgttgacgagatgttggagttgggagtacaggctgaaccagaaattgag
gcgatcgctaattgggcaaaaatccgcaaaaattggcgttatggtcaaggcgctatcagt
atcaatatgcccgaagccatgatcaaagtcaaagacgataatattaatattgatgtttta
gatgattcctcatcccgccaattagtagcagaaatgatgattcttgctggagaagtagcc
gcgcgttatggtcaaacccataatatccctctcccctttcgcggtcaacctcaaccagaa
ttaccaccagacgaagaattactgcaacttcccgctggttttgtccgttcctgtgccatg
cgtcgctgtatgcctaagagcgaaatgagcattacaccggtgcgtcatgctgggttaggt
ttagatacctacactcaagctacctctcccattcgtcgttacagcgacttactcacccac
ttccaactgaaagcacatttacgcggtgaaggtttacctttctctgctgaacaactcaaa
gaagtgatgatgacagtcatgagtactacccaggaagcaacaatggtggaacgacaaaca
aatagatattacgccttagaatatttacgtcgtcatcctgaacaagtttggcaggtgact
gtattaatgtggttacgagaagatagcaatttagcattaattttattagaagatttaggt
ttacagttgcctatgtctttccgccgttctgttaatttaggagaaaatttattagtcaaa
gttagtttggctgacccccaaaaagatatgattcacttccaagaaattatgtatcaggaa
gcccaatcaattacaaattag
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