Dolichospermum compactum: NIES806_24770
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Entry
NIES806_24770 CDS
T10125
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dcm Dolichospermum compactum
Pathway
dcm03410
Base excision repair
dcm03430
Mismatch repair
dcm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES806_24770
03430 Mismatch repair
NIES806_24770
03440 Homologous recombination
NIES806_24770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcm03400
]
NIES806_24770
DNA repair and recombination proteins [BR:
dcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES806_24770
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES806_24770
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES806_24770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF4452
Motif
Other DBs
NCBI-ProteinID:
BAZ86266
UniProt:
A0A1Z4V409
LinkDB
All DBs
Position
2584978..2587290
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AA seq
770 aa
AA seq
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MEWILTTQEKPPDWFIELVKKYAPTTGVNFAAQLFWQRGIQDQEKLAAFINYQSYQPASS
FEFGQEMNLAVQRLITAGKTGEKIAIWGDFDADGITSTAVLWDGLGEFFQQHRQLSYYIP
NRLTESHGLNKSGIDNLAAQGCKLIITCDTGSTNISEIIYAQNLGLDVIVTDHHTLPPER
PPVIAIINPRYLAQEHPLYHLSGVAVAYKLVEALYIRLPDIPEHPLTDLLDLVAVGLIAD
LVQLSGDCRYLAQLGIQQLHTDFKKTPSARRRPGVGKLLELCQKSGDRPTDISFGLGPRI
NAVSRIHGDASFCVELLTSRDMQRCQQLAEETELANSRRKSLQKDVQAQVTKKLSQLDLS
TTSVIVLEDPQWAGGVLGLVAGQIAQETGRPTILLSTEAKENKTDSSPSLARGSARSINS
VDLYQLVQEQAHLLHRFGGHPFAAGLSLLVENIPLFTAAINQKLRQSLGGINLTPTVQAD
LVVTVADLGKDLFLELKLLEPCGMGNPIPKLLIKNCWFENSWHKNEQDFKGNKIQYIKTD
FNIRDNSTNNPFPGIWWGHYKEELPMGRCDCIAEIDFNSFKKRYEIRLITVRPNNESELK
TKNSALVLDWRNQENLTELNPEQSLLIMQDCPTNWDHLRLWFKQSLNQKKQLVITWRKPQ
NLNPKDIWLTLVGISKYLSRTNQPVTRIKLLEKLGISDQSLYLGFQALKHLGFIIQRQDN
HLQIIWDSTHHLQPADNVINQFLAAVREEQFQRDYFFHVPLSIIIAMIGK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggaatggattttaacaacacaagagaaacccccagattggtttattgaattagtgaaa
aaatacgcaccaacaacaggtgttaactttgctgctcaattattttggcaaagaggaatt
caagatcaggaaaagttagcggcttttattaattatcaaagttatcaacctgccagttct
tttgaatttggacaagaaatgaatttggctgtacaacgattaataactgcgggcaaaaca
ggagaaaaaattgctatttggggagattttgatgccgatggaattacctcgacagcggta
ttatgggatggtttgggtgaattttttcagcaacatcgtcaattaagttattatattccc
aatcgcttaacagaatctcatggtttaaataaatcaggaattgataatttagcagcccaa
ggttgtaaattaattattacttgtgatacaggcagtacaaatatttcagaaatcatctat
gcccaaaatttagggctagatgtaattgtgactgaccatcatacattaccacccgaacgc
cctccagtcatcgccattattaacccgcgttatttagcacaagaacatcctttatatcat
ctttctggtgtggcagttgcttataaattggtagaagcattatatatcaggttgccagat
attcccgaacatccattaacagatttattagatttagtagcagtaggattaattgccgat
ttagtccaattaagtggtgattgtcgctatttggcacagttgggaattcaacaattacac
acagactttaaaaaaacaccatcagccagaagaagaccaggagtggggaagttattagaa
ttatgccagaaaagtggcgatcgccccacagatatttcctttggtttgggaccccgcatt
aacgccgttagtcgcattcatggtgacgctagtttctgtgtagaattattaaccagtaga
gatatgcaacgttgtcaacaacttgcagaagaaacagaattagctaattctcgtcgcaaa
tctttacaaaaagatgtccaagcccaagttactaaaaaactcagtcaattagacttatca
accaccagcgttattgttttagaagatcctcaatgggcaggtggtgttttaggtctggtt
gccggacaaattgcccaagaaacagggcgaccaacaattttgttaagtacagaagcaaaa
gaaaataagacggattctagcccatctctagcacgaggttcagcccgttccattaactcc
gttgacttatatcaattagttcaagaacaagcccatttattacatcgttttggtggacat
ccctttgcagcagggttgagtttattagtagaaaatatccccctatttacagccgcaatt
aaccagaaattacgtcaatctctaggaggaataaatctcactccgacagtacaagctgat
ttggtggtgacagttgccgatttaggcaaagatttatttttagaattaaaactgttagaa
ccctgtggaatgggtaatcctattcccaaattattaattaaaaactgttggtttgaaaat
tcttggcataaaaatgaacaagatttcaaaggcaataaaatccaatatattaaaactgac
tttaatattcgagataattctaccaataatccgtttccggggatttggtggggacattat
aaagaagaactgcctatgggtagatgtgattgtattgccgaaattgatttcaacagcttt
aaaaaacgttatgaaattagattaatcaccgtccgtcctaataacgaaagcgaattaaaa
accaaaaattcagcattggttttagattggcgaaatcaggaaaacttaaccgaactaaac
ccagaacaatcattattaattatgcaagattgtcctactaattgggatcatttacgttta
tggttcaagcaatcgctcaatcaaaaaaaacaattagttattacttggagaaaaccccag
aatttaaaccccaaggacatttggctaactttagtaggaatttctaaatacctcagtcgc
acaaaccaacctgttaccagaatcaaacttttagaaaaactaggtattagtgaccaaagc
ctatatttgggttttcaagcattaaaacacctgggatttatcatccaacgtcaagataat
catttacaaataatctgggattctacacatcatctccaacccgcagataatgttattaac
caatttttagccgcagtcagagaagaacaattccaacgagattatttttttcatgtgcct
ttatctattatcattgccatgattggtaaataa
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