Dyadobacter chenwenxiniae: MUK70_06725
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Entry
MUK70_06725 CDS
T08907
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dcn
Dyadobacter chenwenxiniae
Pathway
dcn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUK70_06725 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcn03400
]
MUK70_06725 (ligD)
Enzymes [BR:
dcn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUK70_06725 (ligD)
DNA repair and recombination proteins [BR:
dcn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUK70_06725 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
GH3
Pep3_Vps18
Motif
Other DBs
NCBI-ProteinID:
UON86348
LinkDB
All DBs
Position
complement(1622109..1624079)
Genome browser
AA seq
656 aa
AA seq
DB search
MLATLVDEPFDDPGWEYEVKWDGYRAIAYINNGTTELKSRNNKLFNDKFYPIYEGLCDWK
INAVLDGEVVVINDKGHSDFGALQNWRSEADGELVYYVFDILWYEGKSLLDLPLTERKAI
LQSIVNEDSPVRIGYSIAAEGTAFFTAAGEMGLEGIIAKRSDSTYRAGLRTNDWLKIKIH
KRQEVIIAGYTRNAGTSKRFSALLLAAYEQGVLQYVGKVGTGFKDKQQKEMLELFKPLET
ESSPFKETPDYNKPSRFRPNPPKANATWLKPELVCEVSFTEVTSDGVFRHPSFEGMREDK
KATDVVREIEQPTEKVVEAETPEKTGKKAEKQEEIIEKPAKSKRKTLLNPTEETQVRKIN
GNEVKFSNLSKIFWHQEKITKRDVINYYYQVAPFILPYLERRPLSLNRFPNGIDGKSFYQ
KDVTGKVPSWVETFPYTSNDEDQEKNFMVCNDEAALLYMANLGCIDMNPWNSRTNKPDNP
DWCLLDLDPDTTNTFEQVIETALAIKQLLESLNIESYCKTSGSTGLHIYIPLGAKYSYDQ
CQLFAQWIASQVQQELPGFTSIERMTKNRKGKLYIDYLQNRPKATLAAPYSIRPKPGATV
SMPLHWEEVKIGLQLRDFTILNAMDRLQQEGDLFKPVLGQGIDLEAVIGKIEAKAK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccacgctcgtggacgaaccatttgacgatccgggctgggaatatgaggtcaaa
tgggatggttaccgtgccattgcttacattaataacggtacgaccgagctgaaatcgcgt
aataacaagttattcaatgacaaattttaccccatttacgagggcttgtgcgactggaaa
atcaatgcggtgctggacggcgaggttgttgtgatcaatgataaaggccattcggatttt
ggcgcactgcaaaactggcgcagcgaggctgacggcgagcttgtttattatgtttttgat
attctttggtatgaaggaaaaagtttgctcgaccttccgctaaccgagcgtaaagccatt
ttgcaaagcattgttaatgaggacagcccggtcaggatcggttacagcattgccgctgag
ggaaccgcatttttcacagcggccggcgaaatgggcttagaagggatcatagccaagcga
tccgatagcacatatcgggcaggtttacgtacgaacgactggttgaagatcaaaatccat
aagcgccaggaggttatcattgcaggttacacgcggaacgcaggcacttccaagcgtttc
agcgcgctgctgctggctgcgtacgaacagggcgtgctgcaatatgtgggcaaagtaggg
acgggttttaaggataaacagcaaaaggaaatgctggaactatttaagccgctggaaaca
gaaagcagcccgtttaaagagacaccggattacaacaagccttcgcggttccgccctaac
ccacccaaagccaatgcgacctggctcaaaccggagctcgtgtgcgaagtaagctttacg
gaggtgacttccgatggcgttttccgccatccgtcattcgaaggaatgcgtgaggacaaa
aaagccacggatgtagttcgcgaaatagagcagccgacagaaaaagtagttgaagcggag
actcctgaaaagacagggaagaaagctgagaagcaggaagagatcattgaaaaacccgcc
aagtccaagcgcaaaacactactcaacccgacagaagaaacgcaggtcagaaaaatcaat
ggtaacgaggtgaaattctctaatctaagcaaaatattctggcaccaggaaaaaatcacg
aaacgcgatgttatcaattattactatcaggtcgctccgtttattttgccttatctcgaa
agaaggccgctgtccctgaaccgtttcccgaatggcatagatggaaagagtttttatcaa
aaagacgtaaccggcaaagtgccttcctgggttgaaacatttccttacacttccaatgat
gaagatcaagagaaaaacttcatggtttgtaatgacgaggcagcattgttatacatggcc
aatctgggctgcatagacatgaatccatggaacagccgcacgaacaaaccggataatccc
gactggtgcctgcttgatctggatcctgacacaaccaacacttttgagcaagttattgaa
acggcgttggccattaaacagttactcgagtcgttaaatattgaaagttattgtaaaact
tccggctccacgggtctgcacatttacattccgcttggcgcaaaatacagttacgatcaa
tgtcagctttttgcacagtggatcgcaagccaggtgcagcaagagttgcccgggttcacg
agcattgagcgcatgacaaagaaccgcaaagggaaattatacattgattatctgcaaaac
cgcccgaaagcaacattggcagctccttactctatccggcccaaaccgggtgcaacggtc
tctatgccattacattgggaggaagttaaaatcggtttgcagctacgcgactttactata
ctgaatgcgatggataggctgcaacaggaaggcgatctgtttaaacccgtgctgggccaa
gggatcgaccttgaagcagtcattggaaaaatcgaggcaaaagcgaagtaa
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