Dermatophilus congolensis: SAMEA4475696_1514
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Entry
SAMEA4475696_1514 CDS
T05038
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor hrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
dco
Dermatophilus congolensis
Pathway
dco02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dco00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMEA4475696_1514 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dco03021
]
SAMEA4475696_1514 (hrdB)
Transcription machinery [BR:
dco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMEA4475696_1514 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
SNV22408
UniProt:
A0A239VLB9
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All DBs
Position
1:1717303..1718967
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AA seq
554 aa
AA seq
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MQHVANASAEAPTGKNGTKPLPAEFSHPAIAELLAAGAATGTVDSVSVQRALVAAELTLA
RQKAVLRALEMSGITVTLDANHAAQAVAEGLGDKPRKRTPRRKSTKAAGTTTRRTSRATT
KKVAPAADAAEGSEEAADKPAPRKRATRSTAKSAAAKTTRTRKAAKEDPELEDDLDVVSE
EFDEPIVDDLVDTDHDLVDDEPEDDDGEEVTPRGRRSRKSKKDDKNDGSEESGFVLRDDD
EEDAPAQQVVTAGATADPVKDYLKQIGKVALLNAEQEVDLAKRIEAGLFAEKILEREEFD
PMLTRDLRWVIMDGRNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK
FDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREP
TPEELAKELDMTPERVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFT
LLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKL
RHPSRSQVLRDYLD
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcacgtggcgaacgcctccgcagaagccccaaccggtaagaatggaaccaagcct
cttccggccgagttctcgcacccggccatcgccgagctgctggcggctggtgccgccaca
ggaaccgtcgacagtgtttccgttcagcgcgcgctggtcgcggctgaattgactttggcg
cgtcagaaggcggtgttgcgtgctcttgagatgagtggcatcacggtcactcttgatgcg
aatcacgcagcgcaggctgttgctgaaggccttggtgacaagccgcgtaagcgtacgccg
cggcgtaagtcgactaaggccgctggtactacgacgcggcgtactagccgggccacgacg
aagaaggtcgcgcctgcggctgacgcggcggagggatcggaagaggctgcggacaagcca
gcgccgcgtaagcgcgcgacgcgttcgacggcgaagtcggcggctgcgaaaactacgcgt
acccgtaaggccgcgaaggaagatccggagctcgaggacgatctcgatgtcgtgtctgag
gaattcgatgagcctattgtcgatgaccttgttgacaccgaccacgatctcgttgatgac
gagcctgaagatgatgacggtgaagaggtcactcctcggggcaggcgttcacgcaagtct
aagaaggacgacaagaacgatggctctgaagagtcgggctttgttctgcgtgacgatgat
gaggaagatgccccggcgcagcaggttgtcactgctggtgctacggccgacccggtcaag
gactacttgaagcagatcggtaaggtcgccctccttaacgctgagcaagaggttgatctt
gctaagcgtattgaggcgggtttgttcgctgagaaaattcttgagcgtgaagagttcgat
ccgatgctgacccgcgatttgcgttgggtgatcatggatggccgtaacgccaagaaccac
ttgctggaggccaaccttcgtctggtggtttcgctggctaagcggtacacggggcgtgga
atgttgttcctggacttgatccaggaaggcaacctcggtctgattcgtgcggttgagaag
ttcgactacacgaagggcttcaagttctcgacgtatgcgacgtggtggattcgccaggcc
atcactcgtgctatggctgaccaggctcgcaccattcgtattccggtgcacatggttgag
gtcatcaacaagttggctcgggtgcagcgccagatgctgcaggatttgggtcgcgaaccc
acgccggaggagctggccaaggagctcgacatgacgcctgagcgcgttgtcgaggtgcag
aagtatgggcgtgagccaatttctctgcacactccgctgggtgaggatggcgacagcgag
ttcggtgacctcattgaggactctgaggctgtggttcctgctgacgcggtgagcttcacg
ttgttgcaggagcagttgcactcggtgctagacacgctttctgagcgtgaggcgggcgtg
gtgtcgatgcgtttcggtttgactgatggtcagccgaagactctcgatgagatcggcaag
gtgtatggcgtgacgcgtgagcgtatccgtcagatcgagtcgaagacgatgagtaagctg
cgtcacccgtcgcgttctcaggtgttgcgcgactacttggactga
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