Dermatophilus congolensis: SAMEA4475696_2072
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Entry
SAMEA4475696_2072 CDS
T05038
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dco
Dermatophilus congolensis
Pathway
dco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4475696_2072 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dco03021
]
SAMEA4475696_2072 (rpoC)
03400 DNA repair and recombination proteins [BR:
dco03400
]
SAMEA4475696_2072 (rpoC)
Enzymes [BR:
dco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4475696_2072 (rpoC)
Transcription machinery [BR:
dco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4475696_2072 (rpoC)
DNA repair and recombination proteins [BR:
dco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4475696_2072 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
SNV24505
UniProt:
A0A239VQD8
LinkDB
All DBs
Position
1:complement(2312574..2316458)
Genome browser
AA seq
1294 aa
AA seq
DB search
MLDVNYFDELRIGLASADDIRTWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEARHRDLPSLEAQIEVEKKSLENARDAKIEERAKKLEAD
IAELEAEGAKGDVRRKVRDSAEREMNSIRKKADKEAERLDQVWTRFKNLKVQDLEGDEML
YREMRDRFGMYFEGSMGAAALQKRLETFDLEAEAEQLREIIQTGKGQKKTRAIKRLRVVT
AFQTTDNNPNGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERSR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIKLHPLVCGAFNADFDGDQ
MAVHVPLSPEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLFHLTSIREDGPGAGR
AFRSAEEAQMAFDAGEIHLGSSVKIRIDDFVPGLGEAAPEGLVPNANGRFDGVVIETTLG
RYIFNTALPVDYPWVEEPVDKKKLGAIVNDLAERYSKVQVAASLDALKELGYYWGTRSGA
TVAVADVVMPPNKDEILSQYESKAEKVQTQFERGLLTDEERRQELIEIWTEGTNKVASAM
QENFPKLNPIYRMVSSGARGNWFQLRQIAGMRGLMANPKGEIIPRPIMSNFREGLSVLEF
FISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREHDCGTMRGLTLPIAVRNSEGE
LVLDENVESAVYARTLAEDVVKDGEVLASAGADVGDVLIARLVAAGVEQVKVRSVLTCDS
HVGTCALCYGRSLATGKLVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAAGDDITQGLP
RVVELFEARTPKGVAPIIETAGRVEIEETDKSRRILITPDDGSEEQAYPVSKRARLLVNN
GDHAEIGARVVAGPVDPKQVLRILGPRAVQIHLVEEVQGVYRQQGVSIHDKHIEVIVRQM
LRRVTIIEAGDADLLPGSMAERGHFELENRRVVAEGGKPASGRPELMGITKASLATDSWL
SAASFQETTRVLTDAAINAKSDPLLGLKENVILGKLIPAGTGLTQYRNTRVEPTEEAKAT
MYSLPDYQQFDYPVFGPGSGEAVRLDDASLGFSD
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactactttgacgagctgcgtatcggcctggccagcgcggatgacatc
cgtacttggagccatggcgaggtgaaaaagcccgagacgattaactaccgcacgcttaag
ccagaaaaggacggtcttttctgcgagcgtatttttggtccgactcgtgactgggaatgc
tactgcggtaagtacaagcgggtgcgctttaaaggcatcatctgcgaacgctgtggcgtc
gaggtgacccgctctagtgtgcgccgtgagcggatggggcacattgagctagctgctcct
gtgacacatatttggtacttcaagggtgttccaagccgcttgggctacctgcttgatttg
gccccgaaagaccttgaaaaggtcatctacttcgcggcttacatgatcaccagcgttgac
gaggaagcgcgtcaccgtgatcttccttctcttgaagctcaaatcgaggttgagaaaaag
agccttgagaacgcgcgtgacgccaagattgaagagcgagcaaaaaagctcgaggcagat
attgcagagcttgaagcagaaggcgctaaaggcgacgttcgccgcaaagtgcgtgattcc
gcagaacgtgagatgaactccatccgcaagaaagcggataaagaggcagaacgccttgac
caggtatggacccggttcaagaacctcaaggtgcaagaccttgaaggtgacgaaatgctc
taccgcgaaatgcgtgaccgcttcggcatgtatttcgagggatccatgggtgcagctgcc
ctgcagaagcgcctggagacttttgatcttgaggctgaggctgagcagctacgtgagatc
atccagaccggaaaaggtcagaaaaagacgcgtgccattaagcgtcttcgtgttgtcacg
gctttccaaaccacggacaacaatcccaatggcatggttttggactgcattccggttatt
ccgccggatttgcgtccgatggtgcagttggatggtggccgctttgcgacctctgacctg
aatgacctgtaccgacgggttattaaccgcaacaaccgtctcaagcgtctccttgatctc
ggtgctcccgagattatcgtgaataacgagaagcggatgctgcaggaggctgttgacgca
ctcttcgataacggtcgtcgtggccgccctgttaccgggccaggtaaccgtcctcttaag
tccctttcggacatgttgaaggggaagcagggacgtttccgtcagaacttgctgggtaag
cgtgttgactactctggtcgttctgtcatcgtggtcggtccgactttgaaactgcaccag
tgtggtctgcccaagcagatggcattggagctcttcaagcccttcgtgatgaagcgcttg
gtcgatctggaccacgcacagaacattaagagcgccaagcgcatggtggagcggtcacgt
ccgcaggtgtgggatgttctcgaagaggtcattactgagcaccctgtcttgttgaaccgt
gcacctacgctgcaccgacttggtattcaggcttttgagccccagctggtcgaaggtaaa
gctattaagcttcacccgcttgtgtgtggcgccttcaacgcggacttcgacggcgaccag
atggcagtccacgtgccgctttcgccagaggctcaggctgaggctcgaattctcatgctc
agcagcaataacatccttaaaccatcggatggtcgaccggtgaccatgccttctcaggac
atgattatcggcctattccacctcaccagtattcgtgaggatgggcctggtgctggcagg
gcattccgctccgcagaggaagcgcagatggctttcgatgctggcgaaatccatctcgga
tcgtccgtaaagatcaggatcgatgatttcgtcccggggctaggagaagcggcaccggaa
gggttggtccccaatgccaatggccgtttcgatggtgttgtcattgaaacgactctgggg
cgctacattttcaacacagcattgcctgtggattacccatgggttgaagaaccagttgac
aagaaaaagcttggcgccattgtcaacgacctcgcagagcggtacagcaaggttcaggtt
gcggccagcctcgatgcgctgaaggagctcggctactactggggtactcgctcaggtgcg
actgtcgccgtggctgacgtggttatgcctccgaacaaggatgagatccttagccagtac
gagtccaaagcagagaaagttcagacgcagttcgagcgcggtcttttgactgacgaggaa
cgccgtcaagagctgattgaaatttggactgagggaactaacaaggttgcttctgctatg
caggagaacttccccaagctaaacccgatctatcggatggtttcttcgggggcacgtggt
aactggttccagctccgtcagatcgctggaatgcgtggattgatggcaaacccgaagggt
gaaatcattccgcgtccgattatgtcgaacttccgtgagggcctttcggttctcgagttc
ttcatttctactcacggtgctcgtaagggtcttgcagacaccgctcttcgtacagcggac
tctggatacctcacgcgtcgtctcgttgatgtgtctcaggatgtcatcatccgtgagcac
gattgcggaacgatgcgtggcctcaccttgcctatcgccgtgaggaacagtgaaggcgag
cttgtactcgatgagaatgttgagtctgctgtttatgcaaggactctcgccgaagacgta
gtgaaagatggcgaggtcctcgcctctgctggagccgacgttggcgatgtgctaatcgcg
aggttggttgcggcaggagttgagcaggtcaaggttcgatcggttcttacgtgtgatagc
catgtcggcacctgtgccttgtgctacggccgttctttggccaccggaaagctcgttgag
attggtgaagcagtaggtatcatcgctgcgcaatcgattggcgagcctggtactcagctc
accatgcgtaccttccacactggtggtgctgcaggtgatgacatcacccagggtcttccg
cgtgttgtcgagctattcgaagcacgtacacccaagggcgtcgctccgatcattgagact
gccggccgtgtggaaattgaagaaacggataagtctcgccgcatcctgattacaccagat
gatggttctgaggaacaggcttaccccgtctcgaagcgagcccgtttgttggttaacaac
ggtgatcacgccgagattggtgcacgagtcgtcgcaggaccagtggatcccaagcaggta
ttgcgtattttgggtccgcgtgcggttcagatccaccttgtggaagaagtgcagggcgtc
tatcgccagcagggtgtatccatccacgacaagcacatcgaggtcattgttcgccagatg
cttcgccgagtgacaattatcgaggctggagatgcagatctcttgccaggttcgatggct
gagcgtggtcacttcgagttggaaaaccgacgggttgttgccgagggtggcaagcctgct
tcgggtcgacctgagctgatgggtattacgaaagcttcgcttgctactgactcgtggctt
tcggcagcctctttccaggagaccactcgagtgcttaccgatgcggcgattaacgctaag
tctgacccgctccttggtcttaaggagaatgtcattctcggtaagctcattcctgcaggt
accgggcttactcagtaccggaacacgcgagttgagcctaccgaggaagcgaaagcaacg
atgtattcgttgccggattatcagcagttcgactatccagtcttcggtccaggatcgggt
gaagctgttcggttggacgatgcatcgcttggatttagtgactga
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