Drechmeria coniospora: 63720810
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Entry
63720810 CDS
T11322
Symbol
DCS_08167
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dcon Drechmeria coniospora
Pathway
dcon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
63720810 (DCS_08167)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcon03019
]
63720810 (DCS_08167)
03041 Spliceosome [BR:
dcon03041
]
63720810 (DCS_08167)
03009 Ribosome biogenesis [BR:
dcon03009
]
63720810 (DCS_08167)
03016 Transfer RNA biogenesis [BR:
dcon03016
]
63720810 (DCS_08167)
Enzymes [BR:
dcon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
63720810 (DCS_08167)
Messenger RNA biogenesis [BR:
dcon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
63720810 (DCS_08167)
Spliceosome [BR:
dcon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
63720810 (DCS_08167)
Complex C
U4/U6.U5 tri-SnRNP related factors
63720810 (DCS_08167)
Ribosome biogenesis [BR:
dcon03009
]
Eukaryotic type
Pre-60S particles
Helicases
63720810 (DCS_08167)
Transfer RNA biogenesis [BR:
dcon03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
63720810 (DCS_08167)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
Glyco_hydro_65C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
63720810
NCBI-ProteinID:
XP_040655551
UniProt:
A0A151GGH6
LinkDB
All DBs
Position
03:complement(<9247435..>9250800)
Genome browser
AA seq
1103 aa
AA seq
DB search
MDEMFDIFEGKPGPQSEDDDEQVPQPNRTRERKSKTGKKRKVDEAMNGAATEDVTKDEAK
PTAAVEADESDESPKGDESDRHGSETPSQQEKKRRKREGDVAPVLTDTFETAQSREVAGA
TTLLPQESSLVLSHNIQHQVALPPDLDYDYVPLSEHKAPEEPARTWNFKLDPFQSLSVAS
IERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKFRDFDAIFGDVG
LMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETI
IMLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPCGGKGASM
VVDEKGNFNEHNFNQIMKEVEDRKGAESNDANAKMKGKGKNKKTNKGGADEGSDIYKIIK
MTVKRKFNPVIVFNFSKREVENLALKVSGLDFNDDSERAMVKKVFESAIESLSEQDRELP
QIAHILPLLMKGVGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFT
QVTKWDGVKRRPITCSEYIQMAGRAGRRGLDARGLVLMMVDDKLEPDVAKEIVTGQQDNL
NSAFYLGYNMILNLLRIEAISPEYMLERCFHQFQTAASVPSLENELVALQRERDGLSIPD
EATVKDYYQIRQQLNTYTKDMRAVIQHPQYSLGYLQPGRLVQIYNPKESADSVSGGLDFG
WGVIVSQEKRRSPKLGEPEAIAQESHVINVLLPLSASSVTVSSAHPAEEIQQGIVPAGAD
EDVIHETVPCLLTCIKAISQIRIFMPKEGLKRREDRDTAQKSLAEVKRRFPDGLPILDPI
ENMEITDESFKKLMRKIEVLESRLLANPLHLSPLLPSLWEQYHAKVRVGEQIKAKKKTIA
KAHSIAQMDELKSRKRVLRRLGFINDAEVVQLKARVACEISSTEGHELLLSELLFDRFFN
EMTPESIAAILSCFIFDEKVETQALKEDLQKPYREILAKARIVAKISQECKLDVNEDEYV
ASLKWQLMETVYTWAQGRSFAEICKMTNTYEGSLIRLFRRLEELLRQMAQAAKVMGNEDL
TKKFEESLSKIRRDIVAAQSLYL
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatgtttgatatcttcgagggcaagcctggcccgcagagtgaagatgacgac
gagcaggtaccacaaccgaaccgaacccgcgagaggaaaagcaagacgggcaaaaagaga
aaagtcgacgaagctatgaatggtgcggcgaccgaggatgtgaccaaggatgaggccaaa
ccgacagctgccgtggaagccgatgaaagcgacgagagcccaaagggcgatgagtctgac
aggcatggctcagaaacacccagccagcaggaaaagaagcgtcggaaaagagagggggat
gtggcaccagttctaaccgataccttcgagacggctcagtcacgagaggtagcgggagcg
acgaccttgttgccccaagagtcctcgctcgtcctgtcccacaacatccagcatcaggtc
gcacttccccctgacctggactacgattacgttcccttgtcagagcacaaagcgcccgag
gagcccgcaaggacctggaacttcaagctcgatcctttccagagtttgtccgttgcgtcg
attgagcgtgacgagagcgttctggtatcggcccacacgagtgccggaaagacggtcgtc
gccgagtatgcgatcgcgcagtgcctcaagcgcaaccagagggtcatctacacgagccca
atcaaggcattgagcaaccagaaattccgagattttgatgccattttcggcgacgttggc
ctcatgacgggagatgtgaccatcaacccgactgccagctgtctggtcatgacgacggag
attctgcgctccatgctgtaccgcggctccgagatcatgcgagaagttgcctgggtcgtc
ttcgacgagattcactacatgcgagacaagacgcgaggtgtcgtgtgggaggaaaccatc
atcatgcttcccgacaaggtccgatacgtcttcctctcagccaccatccccaacgccttt
cagtttgccgaatggatcgccaagattcaccaccaagcctgccacgtcgtctacaccgac
ttccgaccgacgccgctgcagaattacttttacccctgcggcggaaaaggagcgtccatg
gtggtggacgagaagggcaacttcaacgagcacaactttaaccagatcatgaaggaggtc
gaggacaggaagggcgccgagtcgaacgacgccaacgcgaagatgaagggcaagggcaag
aacaagaagaccaacaaaggcggcgccgacgagggctccgacatctacaagatcatcaag
atgacggtcaagcgcaagttcaaccccgtcatcgtcttcaacttcagcaagcgggaggtg
gagaacctcgcgctcaaggtctcgggcctcgacttcaacgacgactcggagcgcgccatg
gtcaagaaggtctttgaaagcgccatcgagagcttgtcggagcaggatcgcgagctgcct
cagattgctcacatcttgcctctgctgatgaagggcgtcggcgttcaccactcgggactg
ctgccgatcctcaaggagacgatcgagatcctcttccaggaatcgctcatcaaggtcctg
ttcgcgacggaaaccttctccatcggcctcaacatgccggcgaagacggtcgtcttcacg
caggtcacgaaatgggacggcgtgaagcgacggcccatcacgtgttcggagtacatccag
atggccggtcgagccggccgacgtggcctggacgcaagaggtctcgtgctgatgatggtg
gacgacaagctggagccggacgtcgccaaggagattgtcacgggccagcaggacaacctg
aattcggcattctacctcggctacaacatgattctcaacctcctccgcatcgaggccatc
tcgccagagtacatgctggagagatgcttccaccagttccaaacggcagccagcgtgccg
agcctggaaaacgaactcgtggccttgcagcgggagcgcgacgggctgtcgatcccggac
gaggccaccgtcaaggactactatcagatccgacagcagctcaacacgtacacgaaggac
atgcgagccgtcatccagcatccgcagtacagcctgggctacctccagccggggcggctg
gtgcagatctacaaccccaaggagtcggccgacagcgtgtcgggcggcctggactttggc
tggggcgtcatcgtcagtcaggagaagcgaagaagccccaagctcggcgagccggaggcc
attgcgcaggagtcgcacgtcatcaacgtcctgcttcccctgtcggcgtcgagcgtcacg
gtttcgtcggcgcacccggccgaggaaatacagcaagggatcgtgccggcgggcgccgac
gaggacgtcattcacgagacggtcccctgcctgctcacctgcatcaaggccatcagccag
atccggatattcatgcccaaggagggcctgaagcgtagggaggacagggacacggcgcaa
aagtcgctcgccgaggtcaagcgccgattccccgacgggcttcccatcctggatccgatc
gaaaacatggagatcacggacgaatcgttcaagaagctgatgcgcaagatagaggtgctc
gagtcccgactgctggccaacccgcttcacctgtcacccctcctgccgtcactgtgggag
caataccacgccaaggtgcgggtcggggagcagatcaaggccaagaagaagacgatcgcc
aaggcgcacagcatcgcgcagatggacgagctcaagtcccggaagcgagtgctgcgccgt
ctcgggttcatcaacgacgccgaggtggtgcagctcaaggcgcgcgtcgcgtgcgagatc
tcgtcgaccgaagggcacgagctgctgctgtcggagctcctcttcgaccgcttcttcaac
gagatgacgccggaaagcatcgccgccatcctgagctgcttcatctttgacgaaaaggtc
gagacgcaggcgctcaaggaagacctgcagaagccgtaccgcgagatcctggccaaggcg
cgcatcgtcgccaagatcagccaggagtgcaagctggacgtgaacgaggacgagtacgtg
gcgagcctgaagtggcagctgatggagacggtctacacctgggctcagggacggtcgttt
gccgaaatctgcaaaatgacgaacacgtacgaggggtccctcatccggctcttccgccgg
ctcgaggagcttctgcggcaaatggcccaggcagccaaggtcatgggcaacgaggacctg
accaagaagtttgaggagagtctgagcaagatacggagggacattgtggcggcgcagagc
ctgtacctgtag
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