Dalotia coriaria (greenhouse rove beetle): 135789929
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Entry
135789929 CDS
T10370
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dcor Dalotia coriaria (greenhouse rove beetle)
Brite
KEGG Orthology (KO) [BR:
dcor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcor03016
]
135789929 (RtcB)
Enzymes [BR:
dcor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135789929 (RtcB)
Transfer RNA biogenesis [BR:
dcor03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135789929 (RtcB)
Prokaryotic type
tRNA splicing ligases
135789929 (RtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
135789929
NCBI-ProteinID:
XP_065156070
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRKYEDELEYLEKINDHCWRIKKGFQPGMNVEGRFYVNKPLEDLMLDELKNSCRPGQV
GGFLPGVKQIANVAALPGIVGYSIGLPDIHSGYGFAIGNMAAFDVDDPKSIVSPGGVGFD
INCGVRLLRTNLTEKDVQPVKEKLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSIVSQRAKKRGLPQLGTLGAGNHYAEIQIVDEIFD
KAAASKMGIEQIGQVCIMIHSGSRGFGHQVATDALVQMEKAMKRDDIETNDRQLACARIN
SKEGQDYLNAMAAAANFAWVNRSSMTFLTRQAFAKQFETTPDDLDMHVIYDVSHNIAKVE
QHMVDGRPKTLLVHRKGSTRAFPPHHPLTPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM
TETFGSTCHGAGRALSRAKSRRNIEYTEVLAKLQEAGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtccgcaagtatgaagacgaactcgagtatctcgagaaaatcaatgaccactgc
tggaggatcaagaaaggcttccaacccggcatgaacgtggagggccgcttctatgtaaac
aaacctctggaagatcttatgctggacgagttgaagaactcctgccggccaggacaagtc
ggtggattcctgcccggagtcaaacagattgcaaatgttgctgcactgcctggcatagtt
ggatattcaatcggtttgcctgatattcactcaggatatggttttgcaattggaaacatg
gcagcatttgatgtggatgatcctaaatcaattgtttcaccaggtggtgttggttttgat
ataaactgcggcgtccgcctgttaagaaccaacctaacagaaaaagatgtgcaacctgtg
aaagaaaaactagcccagagtttgtttgatcatattcctgttggtgttggctccaaagga
ataattccaatgaatgcaaaggatttagaagaagcgctagagatgggtatggactggtca
ttacgcgaggggtacatttgggcggaggataaagaacactgcgaggagtatggccgaatg
ttgaatgcagatccatccatagtcagtcaaagagcaaagaaacgcggactcccacagttg
ggaacactaggtgcaggtaatcactacgccgagattcaaatcgtggacgaaatctttgac
aaagccgccgcatccaagatgggcatcgagcagatcggacaggtgtgcatcatgatccac
tcggggagtcgcggttttggccatcaagtcgccaccgatgccctcgtgcaaatggagaaa
gcaatgaagcgtgacgacattgaaaccaacgatagacaacttgcatgtgcgcgtataaac
tcgaaggaaggtcaggactacctcaacgccatggcggcagccgccaacttcgcctgggtg
aatcgcagttcgatgacattcctcacacggcaagcattcgcgaaacaattcgaaaccaca
ccggatgatttagacatgcatgtgatttatgatgtatcgcataatattgctaaagtggag
cagcatatggtagatgggagacctaagacactattggtgcatcgaaaaggtagtactaga
gctttcccaccgcatcatccactgacaccggtggattatcaactcaccgggcaaccggtg
ttgattggaggaacaatgggcacgtgcagttatgtattaaccggcactgagaagggaatg
acggagacatttggcagcacatgccatggcgcgggtcgtgcgttgtccagggcaaaatca
cgtcgaaacattgaatataccgaagtacttgcaaaactgcaagaggctggtatttcgatt
cgtgttgcatcaccaaaacttgtcatggaggaagcacccgagtcctacaagaacgtcact
gacgtggtggatacgtgccatgctgccggtatcagcaaaaaggcaattaaactgcgtccc
atcgctgtaatcaaaggttga
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