Demequina capsici: RN607_02810
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Entry
RN607_02810 CDS
T10255
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dcp Demequina capsici
Pathway
dcp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RN607_02810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcp03400
]
RN607_02810 (mfd)
Enzymes [BR:
dcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RN607_02810 (mfd)
DNA repair and recombination proteins [BR:
dcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RN607_02810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WNM27951
UniProt:
A0AA96FBV4
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All DBs
Position
582961..586473
Genome browser
AA seq
1170 aa
AA seq
DB search
MSISPTTAPALADALASLPDVDLSSGGHLLGPGAAAPAVVAKAVADDAASPVLVVTATGG
DAEQLAAALGAYLDPQSVGLLPSWETLPHERLSPRSDTVARRLSTLRRLVHPEEVAAETG
LPRLAVVVAPLRAVLQPLVPHLADLTPVRVHVGDRVDLTDLVEALAGAAYSRVDMVERRG
EFAVRGGIVDVFAPTDPHPIRIEFFGDEIDSLRSFSVADQRSLADVPLLWAPPCRELLLT
EDVRRRAASLIGEYPAASDMLARVADGHAVEGMESLIPVLLDRLEPLTDVLPRGTRVLAV
EPERLARRAEDLQRTAQEFLAAAWVSASAGADAPVEADAVFLSLGELEEGLESRGLAWTT
LGPFGSHGAVDTGLAPAEEFRGRLSEGLAWLRTRVADGWKVVLAAASTGSAHRIAEQLAD
ADVPARVVPSLADAPDGVVVIVPGITGRGYQVAGARFALLHESDLTGRAAAVAGPKVKVP
SRRRAQVDPLQLRPGDFVVHEAHGVGRFVELAKRTVRGVEREYLVIEYAPSKKGGPGDRL
SVPTDQLDQVTKYVGGETPSVNKMGGADWQKTKGRARKAVKEIAAELIRLYSARMASTGR
EYGQDTPWQRELEESFPYVETPDQLTTIDEVKADMERSVPMDRLVCGDVGFGKTEVAVRA
AFKSIQDGAQVALLCPTTLLVKQHLDTFTERFAQFPVKVAALSRFQTDKEAKEILDGLAD
GTIDMVIGTHRLITGRVRFKDLGLLIIDEEQRFGVEHKETLKAMRTDVDVLAMSATPIPR
TLEMAVTGIREMSTLATPPEERHPILTYVGPHEDAQVTAAIRRELLRDGQVFYIHNAVKS
INSAARRLGDLVPEARIAVAHGQMSEKQLEQVIVDYYDKKYDVLVCTTIVETGLDISNAN
TLIVERADAFGLSQLHQLRGRVGRARERAYAYFLYPPDKALTETAHDRLQTIAANTDLGS
GMAVALKDLEIRGAGNLLGGEQSGHIEGVGFDLYIRMVGEAVAGFRGEAEEKPPVTIELP
IDAHIPTAYIEHERLRLEAYRKIADAADEATLAEIEEELDDRYGTVPEPVANLMAVARLR
LVLREHGITDVVNQGKHIRLSPVELPDSATMRLTRLYPGTMIKPAVRQILVLAPMTARVG
GSPVEGLAMLDWVRDLLKVIAPVGAPVERG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgatctcaccgaccaccgcacctgcgctcgcggacgccctggcgtccctgccggac
gtcgacctgtcgtcgggcggccatctgctcggtccgggtgcggcggcccccgccgtcgtc
gcgaaggcggtcgcggacgacgcagcgagcccggtcctcgtggtcaccgccactggcggc
gacgcggagcagctcgcggccgccctcggggcgtacctcgacccgcagtccgtgggcctg
cttcccagctgggagaccctccctcacgagcgcctgagcccgcgctccgacacggtggcc
cgccgtctgtcgacgctgcgcaggctggtccaccccgaggaggtcgcggcggagaccggc
ctgccgcgactcgccgtggtggtcgcgcccctgcgcgccgtgctccagccgctggtgccg
cacctggcggatctcacgcccgtccgcgtgcacgtgggggaccgggtggacctcaccgac
ctcgtggaggcgctcgcgggcgctgcctactcgcgcgtcgacatggtcgagcggcgcggc
gagttcgcggtgcgcggcggcatcgtcgacgtgttcgctccgaccgatccgcacccgatc
cgcatcgagttcttcggcgacgagatcgactcgctccggtccttctccgtcgcggaccag
cgctcgctggcggacgtgccgctcctgtgggcgccgccgtgccgagagctgctgctcacc
gaggacgtgaggcgccgggcggcctcgctgatcggcgagtacccggcggcgtcggacatg
ctcgcgcgcgttgccgacggccacgccgtcgagggcatggagtcgctgatccccgtgctg
ctcgaccgcctggagccgctgacggacgtcctgccacgcggcacccgcgtgctcgcggtg
gagcccgagcggctcgcgcgccgcgccgaggacctccagcggaccgcccaggagttcctc
gccgccgcatgggtgtcggccagcgcgggcgccgacgctcccgtcgaggccgacgccgtg
ttcctctcgctcggcgagctcgaggaggggctcgagtcgcgcggcctggcgtggaccacc
ctgggcccgttcggctcccacggcgcggtcgacacggggctggcccccgccgaggagttc
cgcggccggctctccgaaggtctcgcctggctgcgcacccgcgtggccgacggctggaag
gtcgtcctggccgccgcgtccacaggatccgcccaccgcatcgccgagcagctggccgac
gccgacgtgcccgcccgcgtcgtcccctccctcgccgacgcgcccgacggagtggtagtc
atcgtccctggcatcaccggccgtggctatcaggtggccggcgcacggttcgcgctgctg
cacgagtccgacctcaccggccgggccgcggccgtcgccggacccaaggtgaaggtgccg
agccggcgccgcgcccaggtggacccgcttcagctgcgacccggcgacttcgtcgtccac
gaggctcacggcgtcgggcggttcgtcgagctcgccaagcgcaccgtccgcggcgtggag
cgcgagtacctggtcatcgagtacgcaccctcgaagaagggcggtccgggggacaggctg
tcggtgcctaccgaccagctcgaccaggtcaccaagtacgtcggcggcgagaccccgtcg
gtcaacaagatgggcggcgcggactggcagaagaccaaggggcgcgcccgcaaggcggtc
aaggagatcgccgccgagctcatccgcctgtacagcgcgcgcatggcctcgaccggccgt
gagtacggtcaggacaccccgtggcagcgcgagctggaggagtcgttcccgtatgtcgag
acgccggaccagctcaccaccatcgacgaggtcaaggccgacatggagcggtcggtcccc
atggatcggctcgtgtgcggcgacgtcggcttcggcaagaccgaggtggccgtccgtgcc
gcgttcaagtccatccaggacggcgcccaggtcgcgctgctgtgccccacgacgctgctc
gtgaagcagcacctggacaccttcaccgagaggttcgcgcagttccctgtcaaggtcgcg
gcgctgtctcgcttccagacggacaaggaggccaaggagatcctcgacggcctcgccgac
ggcaccatcgacatggtgatcggcacccaccggctcatcacgggccgggtgcgcttcaag
gacctggggctgctcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagacg
ctcaaggccatgcggaccgacgtggacgtgctcgccatgtccgccacccccatcccgcgc
acgctcgagatggcggtcaccggcatccgtgagatgtcgacgctcgccacgccgcccgag
gagcgccacccgatcctcacgtacgtggggccgcacgaggacgcccaggtgaccgccgcg
atccgccgcgagctgctgcgcgacggccaggtgttctacatccacaacgctgtgaagtcg
atcaactctgcggcccgtcgcctgggcgacctggtgcccgaggcgcgcatcgccgtggcg
catgggcagatgagcgagaagcagctggagcaggtgatcgtcgactactacgacaagaag
tacgacgtgctcgtgtgcaccaccatcgtcgagaccggcctggacatctccaacgcgaac
accctcatcgtcgagcgcgccgacgctttcggcctgtcccagctgcaccagctgcgcggg
cgcgtgggccgtgcgcgggagcgggcctacgcctacttcctgtacccgccggacaaggcg
ctcaccgagaccgcccacgaccggctccagacgatcgccgccaacaccgacctgggctcc
ggcatggcggtcgccctgaaggacctcgagatccgcggcgcgggcaacctgctcggcggc
gagcagtccggtcacatcgagggcgtcggcttcgacctctacatccggatggtcggcgag
gccgtcgccggcttccgcggcgaggccgaggagaagccgcccgtcaccatcgagctgccc
atcgacgcgcacatcccgaccgcatacatcgagcacgagcggctgcgcctcgaggcgtac
cgcaagatcgcggacgccgccgacgaggcgacgctcgccgagatagaggaggagctcgac
gaccgttacggcacggtgcccgaaccggtcgcgaacctcatggccgtcgcgaggctgcga
ctcgtgctgcgagagcacggcatcaccgacgtcgtgaaccagggcaagcacatccggctg
tccccggtggagcttcccgactcggcgaccatgcgtctcacgcgcctgtaccccggcacg
atgatcaagcccgcggtgcgccagatcctcgtgctcgcacccatgacggcgcgcgtgggc
gggagccctgtcgagggcctcgcgatgctcgactgggtccgggatctgctgaaggtgatc
gcgcctgtcggtgcgcccgtggagcgcggttag
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