Daucus carota (carrot): 108192276
Help
Entry
108192276 CDS
T05350
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108192276
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108192276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108192276
NCBI-ProteinID:
XP_017227804
UniProt:
A0AAF1ATV6
LinkDB
All DBs
Position
4:6133440..6135491
Genome browser
AA seq
443 aa
AA seq
DB search
MIMGAVRHILYFVYVGFAMSCAASVEMNFTKHDEMVWNLRVAEAKKANVNAYDPHPHHVT
NQLNSHVHKATDKSSNDTRRGLHGQILKGPCIATNPIDQCWRCDPNWDKNRMKLADCALG
FGRHTTGGKGGKVYVVTDASDTDMVNPKPGTLRHAVIQTEPLWIIFKCNMMITLSQELII
TSNKTIDGRGAQVHIAFGAGLMIQFVKNVIIHNLHVHDIKATNGGMIRSSVDHFGLRSKS
DGDGISVFGSSHIWIDHISMFNCVDGLIDVVAASTAVTISNCHFTRHNEVLLFGATDGFT
DDKIMQVTLAFNHFGNGLVQRMPRCRYGFVHVVNNDYTHYLMYAVGGSSSPTILSQGNRY
IAPVDRNAKEVTKRDYAAESEWKNWVWRSQGDLMINGAFFVESGDPKHVFVSGEGMIVPK
PGTMVDKLTQFAGAIGCKSNEPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgataatgggagcagttaggcatatattgtattttgtatatgttggctttgcaatgtcg
tgtgctgcttccgtggagatgaatttcacgaaacacgatgagatggtatggaatttacga
gttgcggaagcgaagaaagctaatgtaaatgcttatgatccgcatccacatcatgtcacg
aaccaattaaacagtcatgtccacaaggcaacggataagagtagtaatgacacaagaagg
ggcttgcacggacaaatattgaaaggcccgtgcatagctacaaaccctatagatcaatgc
tggagatgtgatccaaattgggataaaaaccggatgaagctagctgattgcgctctggga
ttcggccgccacacgaccggtggaaaaggtggcaaagtttatgttgtcacagatgcgtcc
gacacagacatggttaatcctaaacctggaaccttacgtcatgcggttattcaaaccgag
cccctttggatcatatttaaatgcaacatgatgatcacactaagtcaagaacttataatt
acaagtaataaaactattgatgggcgtggagctcaagttcacatcgcttttggagctgga
ctaatgatacaatttgtgaaaaatgtaattatacataatcttcatgttcatgacattaag
gcaactaatggtggaatgattagaagttcggtagatcattttggtttacgatccaagagt
gacggtgatggtatctcagtgtttggctcttctcacatctggattgatcacatttctatg
ttcaattgcgtggacggattgattgatgttgttgccgcttccacagcagttaccatctct
aattgccacttcacacgacataatgaggtgcttttgtttggtgctaccgatggattcaca
gatgacaagataatgcaagtgacgctagcattcaatcattttggtaatggattggttcaa
agaatgccaagatgccgatatggattcgtgcatgtagtcaacaatgattacactcactat
ctaatgtacgctgttggtggcagctctagtcccaccattcttagccaggggaatcgctac
attgctccggtggatcgaaatgctaaagaggtgacgaaaagagactatgcagccgaaagt
gaatggaaaaattgggtatggagatcacagggagacttgatgataaatggggcatttttt
gtagaatctggtgatccgaaacatgtgtttgttagtggtgagggaatgatagtccctaag
cccggaacaatggtagataagctcacacaatttgctggtgctattggctgcaaatcgaat
gagccatgttag
DBGET
integrated database retrieval system