Daucus carota (carrot): 108192299
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Entry
108192299 CDS
T05350
Name
(RefSeq) SEC12-like protein 2
KO
K14003
prolactin regulatory element-binding protein
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108192299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108192299
Membrane trafficking [BR:
dcr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
108192299
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_CDC20-Fz
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
Tricorn_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_RIG_2nd
CFAP43_N
Beta-prop_WDR35_TULP_N
Nbas_N
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_ELP1_1st
Beta-prop_LRRK2
PEP5_VPS11_N
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
108192299
NCBI-ProteinID:
XP_063943967
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Position
2:complement(48582237..48588455)
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AA seq
378 aa
AA seq
DB search
MVIANSKSYGVPLYGASWLPLSLSRSKSEDDSDDSPPSIDATRHVVLSGGGGEGKSGIPN
AILVSQFYADSNSLSDQPVAKLGTGADLPYRMAVHPNGEGLICSMPQSCRWFEWDAVKSD
DGHGWGLKSSEKVLNQLEDVGQQLALTFDDEGSVLAAGGEDGKLRVFKWPSMDSIIDESN
AHASVKDLSFSPDGKFLASVGSSGPGRIWEIASATAIAALQKVKDERFGFCRFSHSIENH
QVLYVTAMQGKGGSIIKWNTTSWKRISSKHITSDSITAFNVSADGKHLVVGTMEGDILVL
HSSSMRVHTVVKKAHLGIVTSLMFSHDSRALLSTSFDSSARVTLVADKKERGTSLWIILL
IILLAMAMYYTKLVEMLP
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggtgattgccaattccaaaagctacggcgtccctctctacggagcatcttggctcccg
ctcagcttatcccgatccaaatctgaggacgactccgatgattctccaccgtcgatcgac
gccaccagacacgtcgttctctccggcggtggcggcgagggcaagagcgggatccctaac
gctattctcgtttctcaattctatgctgattctaattccctctccgatcaacctgttgca
aagcttggtactggggctgatctgccttatagaatggctgtccaccctaatggagaaggc
cttatatgctcaatgccccaaagctgtagatggtttgaatgggatgcagtaaaaagcgac
gatggtcatgggtggggtcttaaatcatctgaaaaagttcttaatcaactagaagatgtt
ggacagcaattagcacttacttttgatgatgagggatctgtacttgctgctggtggtgag
gatggaaaattgagggttttcaagtggcccagtatggacagcattatagatgagtcgaac
gctcatgcctctgtgaaggatttatctttcagccccgatggaaagtttctagcctctgtt
ggaagtagtgggcctggtaggatctgggaaattgcatcagcaacagctatagctgctctg
cagaaagtaaaggatgagcggtttggcttctgcagattttcacatagtatcgagaaccat
caagttctctatgtcactgcaatgcaaggtaaaggtggaagtattataaagtggaacact
acatcatggaagcgaattagctcgaagcatataaccagcgactccataaccgcctttaat
gtttcagctgacggaaaacaccttgttgtagggacaatggaaggtgacattttagtttta
cattcttccagtatgcgggtacatacggtagttaagaaagctcatcttggcatagttaca
tccctgatgttttctcatgattcaagggcacttttgtcaacatctttcgattcaagtgca
agagtgacactggttgctgataagaaggaaagaggaacaagcttgtggatcattttgctg
ataatattgctagcgatggccatgtattacacaaaattggtagaaatgcttccttaa
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