Daucus carota (carrot): 108192474
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Entry
108192474 CDS
T05350
Name
(RefSeq) nuclear pore complex protein NUP62 isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108192474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108192474
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108192474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
COG3_N
Motif
Other DBs
NCBI-GeneID:
108192474
NCBI-ProteinID:
XP_017228454
LinkDB
All DBs
Position
Unknown
AA seq
807 aa
AA seq
DB search
MAGFNFSTNSSSSSSSSPFSFSLSSPNPNPTSSSSQPSSLFGSSPSPFGSSASASSAPSF
SFGFGASSPAVSSSPFGSTASTLFGTASSATATTTTPFGSSTPATTTTPFGSSNTTTTSP
FGGGSLFGTTAGAATSSFGVSATTTSFGAPASTAATTPVFGSNSVTASTGFGFASSTTPF
ATNASTANTNSSPFGSSSVTAPTGFGSTSTTTAFGSNTAPSFGATTGFGSTSSSTPFGVP
ASSSALNTTSSFSNMFGSSTTTASAASSSTFSVQSAPAFSFPGSTGSTSASTSPSLFSPA
SSSSGFSFPAGSGSSSSSSSSSTLGFSFPASSSSASSSAAAPGFVTSTSPFGASKATGFS
SSTPASTTSVSTGFSFSLSKGTGSSAASTTSTSTPTPVASSGSFSFATPVSSTSFNTISP
ATAAVTQPASVGFGTAASSLFSTVTNTTAASTPAATSASTTTTTATAAPAFPSFSLSTGS
TTPTQTTTAASSGPFSVSSFGTSTGTASSASTGLSFSTSASTGLSFSTSSAPGTQNTTAS
FGVAPNSTSGATSLSLGPASKSSAGTTLTSSSAPQSSSALAVASSSGTTSAPAGAAAPVP
KLPSEITGRSVEEIIKEWNAELQTRTGKFRKQATAIGEWDRRILQNRDALLRLETEVANV
VETQTNLERQLELIETHQEEVDKALQSMEDEAERIYKDERALLLDDEAASTRDAMYEQAE
FIERELEHMTEQIKSVIQAVNANQAGELEATDGMTPLDVVVRILNNQLSSLMWIDEKAEE
FSSQIQKLASQGSAADRDLAGQKYWLS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcttcaatttcagcaccaattcttcttcttcatcatcatcttcaccattctca
ttctcactctcttctccaaaccctaaccctacttcttcatcttcccagccttcctccctt
ttcggatcttctccttctccgttcggatcctccgcctccgcctcttccgctccttctttc
tccttcggcttcggcgcctcctctcccgctgtttcctcctcgccgtttggatccactgct
tctactttgttcggaacggcgtcgtctgctactgccaccacaacgacgccgtttggctcc
tctacgccggcaaccactacgacgccgtttggctcgtctaatactacgaccacgtcgcct
tttggcggtggttcgttgtttgggactactgctggtgctgccacatcgtcgttcggtgtt
tcggctactacgacgtcgtttggcgcacctgcttctactgctgctacaacgccggtgttt
ggttcgaattctgttacggcgtctactggttttggctttgcctcttcaacgacgccgttt
gctacaaatgcttctactgccaatactaatagttcaccgttcggttcgagttcagtgacc
gcgcctactggctttggttcgacttccacaacaaccgcgtttggttcgaatacagctccc
agctttggtgccactactggctttggttcgacttcttcgtccacaccttttggtgtacct
gcttcgtcttctgctttgaatacaactagttcattttctaatatgtttggatcttcgaca
actacagcttctgctgcttcatcatcgactttttcggtccaatcagcacctgcattttcg
tttcctggctctacagggtcgacctctgcatcaacttcaccttcgttgtttagtcctgct
tcatcgtcttcaggattttcatttccagctggttcgggttcaagttcaagctcctcgtct
tcgtctacgttgggattttcatttccagccagttctagttcagcctcatcctctgcagct
gcaccgggatttgtgacgtcgacttcgccttttggtgcttccaaagctactggattttca
agctcaactccagcttcaactacatcggtgtcaactggattctcattttcgttatcgaag
gggacaggaagttctgcagcatctactacttctacttctactccgacccctgttgcatcc
tcaggtagtttctcatttgcgactccggtgtcttcaacatcctttaatactatttctcct
gcaacagcagctgttacacaacccgcgtctgttggatttggaactgctgcctcgtctctc
ttttcaaccgttactaatactacagctgcttctactcccgctgctacttcagcgtcaact
accactacaacagcgactgcagctcctgcttttccatcttttagcttaagcacgggatca
actactcccactcaaacaactacagctgcttcatcaggtcctttttctgtttctagtttt
ggtacatcaacagggactgcttcatcggcaagtactggtttaagtttttcaacatcggca
agtactggtttaagtttttcaacgtcatctgccccgggaacacaaaacacaacagcttcc
tttggcgttgctccaaattctacatctggagccacctcgctttcgttaggtccagcttca
aaatcttcagctggaacaactttaacttccagttctgccccacagtcttcttcagcactc
gctgtggcttctagtagtgggaccacatcagcacccgctggagctgcggcacctgtgccg
aaacttccatctgaaattacagggcgttctgttgaagagattatcaaggagtggaacgct
gagctacaaacccgtactggaaagtttcggaagcaggctactgcaattggtgaatgggat
aggaggattttacagaatcgtgatgctcttcttaggcttgagactgaagttgcaaatgtt
gttgagactcaaacaaacttggagcgacaactggagcttattgaaactcatcaggaggag
gttgacaaggcattgcaaagtatggaagatgaagctgaacgtatatacaaagatgagcgt
gcactacttcttgacgatgaggctgcatctacaagagatgcaatgtatgaacaggctgaa
tttatagaacgagagcttgaacacatgactgagcaaatcaaatcggttattcaggcggtg
aatgccaaccaggccggtgaacttgaggcaactgatgggatgactccactggatgttgtt
gtgcgaattttaaacaatcaactaagttctttgatgtggattgatgaaaaggctgaagag
ttctcatcacagatccagaagcttgccagccaaggttccgctgcagatcgggatttggcg
ggtcaaaaatattggttgtcttga
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