Daucus carota (carrot): 108192769
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Entry
108192769 CDS
T05350
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108192769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108192769
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108192769
Enzymes [BR:
dcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
108192769
Messenger RNA biogenesis [BR:
dcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
108192769
Transfer RNA biogenesis [BR:
dcr03016
]
Prokaryotic type
tRNA degradation factors
108192769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_RRP5
KH_PNO1_2nd
CvfB_2nd
Motif
Other DBs
NCBI-GeneID:
108192769
NCBI-ProteinID:
XP_017214738
UniProt:
A0A164VVL7
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All DBs
Position
6:complement(24526709..24535095)
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AA seq
980 aa
AA seq
DB search
MASVALRKNHHLFSLPYILKWRFRNIHASTLATSQSPSPAELEFPVAGTKFLETFTEELE
IGSRKIVLETGKIARFANGAVVIGMDETKVLSAVTSAKGDSVKDFLPLTVDYQEKQFAQG
VIPNTFMRREGAPKERELLCGRLIDRPIRPLFPAGFFHEVQVSANVLSSDGKQDPDVMAA
NATSAALMLSDIPWNGPIGMIRMGRISGNLVVNPSMDELTISDLNLVYACTKDKALMIDV
QAREITERDLEAALKLAHVEAVKYIDPQVRLAGKAGKGKKEYKLSMVSKETYEKIRNLAE
EPIKTIFTDPAYGKFERGEALENITQDIRKALEEDCDEESLKVLPKTVDKVRKEVIRKRI
IDEGFRLDGRRLDEVRPLYCEAGNLPVLHGSSLFSRGDTQVLCTVTLGAPGDAQRLESLV
GPSTKRFMLHYSFPPFCINEVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYAVRINS
EVMASDGSTSMASVCGGSMALMDAGIPLREHVAGISVGLVTDVDPSTGSIIDYRILTDIL
GLEDHLGDMDFKVSGTRHGITSIQLDIKPAGIPLDIICESLEPARKGRLQILDHMEREIN
APRSQDDRNSPRLVILKYNNDAIRRLIGPLGVLKRKIEEETGTRMSVSDGTITMVAKNQS
AMEKVQEKIDFIVGREIEIGGTYKGIVTSIKEYGAFVEFNGGQQGLLHISELSHDPVSKI
SDVLSIGQQVTLRCIGQDVRGNIKLSLKATQPQPRRTSNMTVDFVSSTMETPKIWPPVND
VANEQDKQESAMEDMSLDKNESSDVTSSSSSEILIRSAAECDEVEKSAVLVKNSNSRPKT
SSNKRSDKKSKVVAPQKNDRDSPISAFDLFSSKNSSELKTDFKSSFRGNGMDDGNTSANH
KSSAEAPINAKNLKLGNEVLAKVYQIRAHGLVLDLGGGLRGMYKFEVGGRKDFEVGEEVQ
VKCCSFSSKGIPVMSMLETD
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagtagctcttagaaagaaccaccatcttttctctctgccttacattctcaaa
tggagatttcgcaacatccacgcctccactctcgccacttcacagtcgccttctccggcc
gaattagagtttccggtggccgggaccaagtttcttgaaactttcaccgaagagctcgag
attggctcaagaaagattgtcttggaaactggtaaaattgctcgctttgctaatggcgcc
gtggttattggaatggacgagaccaaggttttgtctgctgtcacgtccgccaaaggcgat
tccgttaaagactttctacctctcaccgttgattatcaagaaaaacagtttgctcaaggt
gtaattccaaatacatttatgcgtagggagggtgctcctaaagaacgtgaattattatgt
ggccgtcttattgaccggcccatacgaccacttttccctgctggatttttccacgaggtt
caggtatcagccaacgttctctcgtctgatggcaaacaagatcctgatgtgatggcagcc
aatgccacgtcagctgctcttatgctttcagatattccttggaatggtcccattggtatg
attcgaatggggaggatttccgggaatttagtcgtgaatccaagcatggatgagcttact
ataagtgatctcaacttggtatacgcctgcaccaaagacaaagctttgatgatagatgtg
caagctcgagagattacggaaagagatctagaagctgcactgaagcttgctcacgttgag
gcagttaaatatatcgaccctcaagtccgactggcagggaaagctggtaaaggaaagaag
gaatataagttatctatggtatcaaaagaaacatatgaaaaaattaggaatctggctgaa
gaaccaatcaaaactatttttacagatcctgcatatggaaagtttgaacgaggtgaggcc
ttagaaaatattactcaagatatcagaaaagctctagaagaagattgtgatgaagaaagt
ttgaaagtattacccaagacagttgataaagtcaggaaagaggttattcgcaaaagaatt
attgatgaggggtttagactggatggaaggcgcctcgatgaagtcaggcctttgtattgt
gaagctggtaatttacctgtattacatggatcatcactcttctctcgcggtgatactcag
gttctttgtactgttaccctaggagcacctggagatgcgcaacgtttggaatcccttgtt
ggcccatctaccaagcggtttatgcttcattatagttttcccccattctgtatcaatgaa
gttggtaaacgaggtggtttaaatagacgtgaggttggacatggcactctggccgagaag
gctctgcttgctgtgttacctcctgaagatgattttccatatgctgttcgtatcaattcg
gaggtcatggcttctgatggttctacatcaatggcatctgtgtgtggaggtagtatggct
ttaatggatgccggaattccgttacgagaacatgtagcagggatctcagtgggccttgtt
accgacgttgatccatctactgggagtataatcgattaccgtatactaacagatattctg
ggattggaagatcatcttggggatatggacttcaaggtttcaggaacacgccatggaata
acatcaattcagttggatataaagccagctggaattcctctcgatataatttgtgagagt
ttggaaccagcacgtaaaggtcgactacagattctcgatcatatggagcgagaaataaat
gcacctcgttctcaggatgacaggaactctcctcgattagttatcctaaagtataacaat
gatgctatcaggcgcttgattggtccgcttggtgtcttaaaaagaaaaatcgaagaagaa
acaggtacacggatgtcagtgagcgatggaacaattacaatggttgcaaaaaatcagtct
gcaatggaaaaagtgcaagagaagattgacttcatagttggccgtgagattgaaatcgga
gggacttacaagggaatcgtaacttcgataaaggaatatggtgcttttgtggagttcaat
ggggggcaacaaggcctcttacacatttccgagttatcgcatgatccggtatccaagatc
tcagatgtgttatccatcgggcagcaagtaactttaaggtgcataggccaagatgttcgt
ggcaatataaagttatctttaaaagccactcaacctcaacctcgaaggacaagtaatatg
accgtggactttgtttcttcgacaatggaaacacctaaaatttggccaccggttaatgat
gttgctaatgaacaggataaacaagaatcagcaatggaggatatgtcgttggacaaaaac
gaaagtagtgatgttacctcttcctcatcatcggaaattctaatccgtagcgctgccgag
tgcgatgaggtggaaaaatctgctgttttagttaagaattccaacagcaggcccaagacc
tcgagtaataaaagatctgataaaaagtcaaaagtagtcgcaccacaaaagaatgaccgt
gattctccaatctctgcctttgatctattttcatcgaaaaattcaagtgagttaaagaca
gatttcaaatccagcttcagaggtaatggtatggacgatggtaacacctctgcaaatcat
aaatcctcagcagaggctcccatcaacgcaaaaaatctgaagctgggaaacgaggtttta
gccaaggtttatcaaatacgggcacatggattggtcttggacttgggcggtggacttcgt
ggaatgtataaatttgaggtgggtgggagaaaggattttgaagttggcgaagaggtccaa
gtaaaatgctgtagcttttctagcaaggggatccctgtaatgtctatgttggaaactgat
tag
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