Daucus carota (carrot): 108192774
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Entry
108192774 CDS
T05350
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108192774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108192774
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108192774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
DUF2465
Motif
Other DBs
NCBI-GeneID:
108192774
NCBI-ProteinID:
XP_017214745
LinkDB
All DBs
Position
6:complement(3692801..3700430)
Genome browser
AA seq
945 aa
AA seq
DB search
MDDPFQEDNKFPELKLDAKQAQGFLSFFKTLPIDNRAVRFFDRRDYYTSHGENATFIAKN
YYRTTTALRQLGNGAYSLSSVSVSKNMFEMIVRDLLLERTDHSVELYEGSGSNWRLVKSG
TPGNLGSFEDILFANNDMQDSPVIAALVPSFKENGCTIGLGYIDLTKRVLGLTEFLDDSH
FTNLESALVALGCKECLLPVDGTKSSESRPLNDAMSRCGVMVTERKKTEFKGRDVIQDLG
RLVKGSMEPVRDLVSGYEFATGALGALLSYTELLADESNYENYNLKQYSLQSYMRLDSAA
VRALNVMESKTDANKNFSLFGLVNRTCTAGMGKRLLNMWLKQPLLDVNKINCRLDLVQAF
VDDPELRQNLRQHLKRISDIERLMRSLEKKSANLVHVVKLYQSSIRLPYIKSALQRYDGQ
FASLIKEKYLNCLDFWTDDNHLNKFLGLVETAVDLDQLENGEYMISPNYDDKLCILKNEQ
ASLEMQINKLHQQTASDLDLAIDKALKLEKGTQFGHVFRITKKEEPKVRKKLNTHFVVLE
TRKDGVKFTNSKLRKLGDQYQKIVEEYRICQKEIVGRVVKTAASFGEIFEGIAASLSELD
VLLSFADLAVSCPTPYTRPDVTPSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGESW
FQIITGPNMGGKSTFIRQVGVNILLAQIGCFVPCDRAQISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVQEIKAPTLFATH
FHELTALAQGDTAQSSNMNNIVGVKNYHVSAHIDSSNRKLTMLYKVEQGACDQSFGIHVA
EFAKFPESVVALAREKAAELEDFSPTSFVTTDAIKEESQVGCKRKREYNQDDMSKGAIQA
RQFLKKFSEMPLDKMDIEQALHEVRTLKNDLQKDAVGCGWLQQFF
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggatgacccttttcaagaagacaacaaattcccggagctcaaacttgatgctaagcaa
gctcaagggtttctatcattttttaaaaccctacctattgacaacagggctgttcgattt
ttcgatcgacgggactattatacttcccacggcgagaatgcaacatttattgcaaagaat
tactatcgtactactactgctttaagacaactgggcaatggagcatattctctttcaagt
gttagtgttagcaaaaatatgtttgagatgattgtccgtgatcttttattggagagaact
gatcacagtgttgagttatatgaggggagtggttcaaattggagattggtaaaaagtggg
acccctggaaatcttggcagtttcgaagacattttgtttgccaataatgacatgcaggac
tctccagtaatcgctgcccttgtcccaagcttcaaggaaaatgggtgcacaattggtctt
ggatatattgatcttactaagagggtactggggttgaccgaatttcttgatgacagccac
tttaccaacttagaatctgctttagttgcacttggttgcaaagaatgtctcttgcctgtg
gatggtaccaaatccagtgaatctaggcccttgaatgatgcaatgtccaggtgtggagta
atggtaactgaaagaaagaaaaccgagtttaaaggtcgtgatgtaatacaggatcttggg
aggcttgttaaaggttccatggaaccagttcgggatcttgtatctggatatgaattcgca
acaggtgctttaggggccttactctcttacacagaattgctagctgatgaaagcaattac
gaaaattataacctgaaacagtacagccttcagagctacatgagattagattctgctgct
gtgcgggcacttaatgtcatggagagcaaaactgatgctaacaaaaatttcagcttgttt
ggtcttgtgaatcgaacctgtactgctgggatgggtaagcgattattgaacatgtggcta
aaacaacctttattagatgttaataaaatcaactgtagacttgacttggtacaagcattt
gtggacgatcctgaacttcgccaaaatttgagacagcatttaaaaaggatttcagatatt
gagcgtttgatgcggagtcttgagaagaagagtgctaatctcgtgcatgttgtgaagctt
tatcagtcaagtatacgacttccatatatcaagagtgccttgcaacgatatgatggacaa
tttgcttcactgattaaagaaaagtacttgaattgcctcgacttctggactgatgataac
cacttaaataagttcctaggtctcgtggaaactgcagttgatcttgaccaactcgagaat
ggagaatacatgatttccccaaattatgatgataaattatgcatattgaagaatgagcaa
gcatcactagaaatgcaaataaacaaattgcatcaacaaactgccagtgatcttgatttg
gctattgataaggctttgaaattagagaagggaacacagtttgggcatgtgtttagaatt
acaaagaaggaagaaccaaaagtgcgaaagaaacttaacacccattttgttgtccttgaa
actcgaaaagatggggtaaagtttacaaattctaagctcaggaaactaggagaccagtac
caaaagattgtcgaggaatacagaatctgtcagaaagagatcgttggccgtgtagttaaa
acagcagcatcttttggcgagatttttgagggtatagctgcatcgctttctgagttggat
gtcttgctaagctttgctgatctggctgttagttgtcccactccctacacaagaccagat
gtcaccccatcggatgaaggagatatcatactagaaggcagtaggcatccttgtgtggaa
gctcaagattgggtgaattttatacctaatgattgtaaacttgtgaggggtgaaagttgg
ttccagatcatcacagggcccaacatgggtggaaagtcaacatttataagacaggtcgga
gtgaacatcctgctggcacagattggatgttttgttccttgtgacagagctcaaatttct
gttcgtgattgtatttttgctcgcgttggtgctggcgactgtcagcttcgtggagtttca
acctttatgcaagagatgcttgaaactgcttcaattttgaaaggagctactgagaagtca
ttgatcataattgatgagctgggtcgtggaacatcaacttatgatggatttggtttggca
tgggctatatgtgagcatcttgttcaagagatcaaagcacctacattgtttgcaacccac
tttcatgaactgactgctttagctcaaggagatactgctcaaagttctaatatgaataac
atagttggtgtgaaaaattatcatgtcagtgcacatattgattcatcaaatcgcaagcta
acgatgctttacaaggtcgaacaaggggcctgtgatcagagttttggaatccatgttgct
gaatttgcaaaatttccagaaagtgttgttgctcttgctagagaaaaggctgctgagctt
gaagatttctcaccgaccagtttcgtcacgactgatgccattaaagaagagtcacaggtg
ggatgcaagaggaagcgagagtataaccaagatgacatgtcaaaaggtgctattcaggct
cgtcaattcttaaagaagttctctgagatgccgcttgacaagatggacattgaacaggct
ctacatgaagtaaggaccttgaagaatgatttgcaaaaggatgctgttggctgcgggtgg
ctgcagcagttcttttag
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