Daucus carota (carrot): 108193135
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Entry
108193135 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108193135
09122 Translation
03013 Nucleocytoplasmic transport
108193135
03015 mRNA surveillance pathway
108193135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108193135
03041 Spliceosome [BR:
dcr03041
]
108193135
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108193135
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108193135
Spliceosome [BR:
dcr03041
]
Complex C
Other components
EJC/TREX
108193135
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108193135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
108193135
NCBI-ProteinID:
XP_017215145
UniProt:
A0AAF0XKL0
LinkDB
All DBs
Position
7:complement(33502021..33508229)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEIKDNDAYEEELIDYEEEDEKAPDSATAKPGGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHVVVGTPGRILG
LARDKNLGLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDDSKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITCVSSTSDSEVLNQVQERFEVDIKMLPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagattaaagacaacgatgcttatgaagaagagctcatcgattacgaggaagaa
gacgagaaagcccccgactccgccactgcaaagcccggtggcgaagccgtcaaaaaaggt
tatgttggtattcatagctcggggttcagagacttcttgttgaagccagagctgcttcga
gctatcgtggattctggatttgaacatccctccgaagtgcaacacgagtgcatacctcaa
gctatcttgggaatggatgtcatttgtcaagcaaaatctgggatggggaaaactgctgta
tttgttttgtctactctgcagcagattgaaccagtggcgggtcaagttgctgcccttgtt
ctgtgccatacaagagaattggcatatcagatatgtcatgagtttgagaggttcagtacc
tacttgcctgacataaaggttgctgtcttctatggtggtgtcaacataaagattcataaa
gatttacttaagaatgagtgccctcatgttgttgttggtacccctggaagaatactgggt
ctggctagagacaagaacttgggtctaaagaatgtgaggcattttatccttgatgagtgc
gataagatgctcgagtcacttgacatgaggaaagatgttcaggatatttttaagatgacg
cctcatgacaagcaagtgatgatgttttctgccacgctgagcaaggagattcgacctgtt
tgcaaaaaattcatgcaagatccaatggaaatatatgttgatgatgactccaagttaact
cttcacggacttgtccagcattatatcaagttaactgagatggaaaagaaccgcaaactt
aatgatcttctagatgctctggattttaatcaagtggtgatttttgtaaaaagtgttagt
agagctgcagaactgaacaaacttctagtagaatgcaatttcccttcaatttgcattcat
tctgggatgtctcaggaagaaaggctgacacgttacaagaattttaaggagggccacaaa
agaattcttgttgctaccgacttggttggcagaggaatcgatattgaacgtgtgaatatt
gttataaactatgacatgcctgattctgctgacacataccttcatagggttggcagggca
ggtaggtttgggaccaaaggccttgcaattacgtgtgtttcatcaacgtcagactctgaa
gttttgaatcaggtccaagagagatttgaggtggacataaagatgcttccagagcaaata
gatacatctacatatatgccatcataa
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