Daucus carota (carrot): 108193145
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Entry
108193145 CDS
T05350
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
dcr04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108193145
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108193145
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dcr01009
]
108193145
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108193145
03036 Chromosome and associated proteins [BR:
dcr03036
]
108193145
Protein phosphatases and associated proteins [BR:
dcr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108193145
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108193145
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108193145
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
108193145
NCBI-ProteinID:
XP_017215159
UniProt:
A0AAF0XLY4
LinkDB
All DBs
Position
7:39249114..39257683
Genome browser
AA seq
501 aa
AA seq
DB search
MAALRWNFSQVFGERNPADDVQPMDVISAIDFDDSGDHLAVGDQGGRLIIFEKKPGKDVT
NGYYSRKELEQSDLSGTQHPQYQYKTEIQSHEPEFDYLKSVEIEEKIIDLKWCARPNQSL
FLLSTNHKTIKLWKVKERKLRKVKVMDPDPLVSSENALLAGKSYIGAQNKSSVSNGDLLE
SGEEVENIRTRPHGGHNRVANLEDDAPARCRRVYAHAHDYNINSISNNSDGETFVSADDL
RINLWNLEVSNQCFNIVDTKPSNMDDLTEVITSAEFHPLHCNTLAYSNSRGFIRLVDLRQ
SALCDHSAKILHDGVSKGQKTFFTEIIMSISDMKFTMDGRHILSRDFMTLKLWDTRMETS
PVASYKVHEHLRPKLSDLYNNDAIFDKFDCCISGDGRHFATGSYSNLMKIYSCGLGGEEG
TILEASKNPYSKAYHQAAPRARRSSLGSLTRALYRHGQETSDSKSNEFPGNLNSKLLRMA
WHPKTNMIACATGNSVYMYYA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcttcgctggaatttttctcaggtttttggtgaacgtaatcctgccgacgat
gttcagcctatggatgtcatatcagcaattgattttgatgacagtggtgatcatctggcc
gttggtgatcaaggagggcgtcttataatctttgaaaagaaacctggtaaagatgtgaca
aatggctattattctcggaaagaattggaacaatcagatcttagtggcacacaacatcct
caatatcaatacaaaacagaaattcagagtcatgaaccagagtttgattatctgaagagt
gtggaaatagaagagaagattattgacctaaaatggtgtgcaaggcccaatcaatcactt
tttcttctttcaacaaatcacaagacaattaaactttggaaggttaaagaacgcaagttg
aggaaagtaaaagtaatggaccctgatcccttagtctcttcagagaatgctcttttggct
ggaaagagctacattggtgcacaaaataaatcatctgtttctaatggcgatctcttagaa
tcaggagaggaagtggagaatattaggacgcggccacatggtggacataacagagtagct
aaccttgaagatgatgctcctgcaaggtgtcggagggtgtatgcacatgctcatgattat
aatattaactctatctcaaataacagtgatggcgagacatttgtttcagcggatgatctt
aggataaatttgtggaaccttgaggtcagtaatcagtgtttcaacattgttgacacgaag
ccctcaaacatggatgatcttacagaggtgataacatcagctgagtttcatccacttcac
tgtaatacgcttgcttacagcaactcaaggggtttcattcgacttgttgacttgcggcag
tcggcactatgtgaccacagtgctaagatattgcatgatggtgtatctaaaggccaaaaa
acattcttcactgaaataatcatgtcaatatctgacatgaaatttacaatggacggaagg
catatattaagtcgtgacttcatgacattaaagctgtgggatacacgcatggagacttca
ccagttgcaagttacaaggttcatgaacaccttcgacctaagttgtccgacttgtataat
aatgatgctatctttgataagtttgattgctgcataagtggagatggacggcacttcgct
actggatcttatagcaacctaatgaagatatattcttgtggacttggtggtgaggaagga
accatcttggaagctagcaaaaatccatatagtaaggcgtatcatcaagctgctccaagg
gccaggagatcatctcttggcagcttaacacgggcgctttacagacatggacaagagacg
tccgactccaaaagtaatgaatttcccggaaacctgaactccaagttgctgcgcatggct
tggcatccgaaaacaaatatgattgcttgtgctaccggaaacagtgtttatatgtattat
gcttag
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