Daucus carota (carrot): 108193378
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Entry
108193378 CDS
T05350
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108193378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108193378
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108193378
Spliceosome [BR:
dcr03041
]
Complex C
Other components
Step II factors
108193378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Sigma54_activ_2
AAA_16
GIPC1_GH2
TsaE
Flavi_DEAD
nSTAND_NTPase5
ABC_tran
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
108193378
NCBI-ProteinID:
XP_017215484
UniProt:
A0A161Y5P5
LinkDB
All DBs
Position
7:23174118..23178816
Genome browser
AA seq
1151 aa
AA seq
DB search
MASDFKETGLKKLEYLSLVSKVCTELESHLGFGDKVLAEFIIELGKNCVSVDDFYVKLKE
NGAEMPDYFVRTLLTIIHAILPPELKLGDDKEEVGEGSSCKSSFPGLNIGDSKDRVRELE
REIAFEAEERRRGKGPRECMYRDGGRGKSKSRHGGERERCRDRDVGDERGDYRKASGNER
DGGNEGDGELKCVEPELYRIYRGRVSRVMDSGCFVRLDDFRNKEGLVHVSQIASRRIPNA
KDVVKRDQEVYVKVISISGHKLSLSMRDVDQNTGDDLLPLKKSSGDVDVVRANPSASHKG
SATRTSLSGIRITEEDDAGPSRRPLKRMSSPERWEAKQLIASGVLSVNEYPMFDDETDGL
LYQEEGAEEELEIELNEDEPAFLNGQTRFSMDLSPVKIFKNPEGSLSRAAALQSALIKER
REVREQQQRAMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYSVPEWKKDTDSKI
LTYGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGY
TTHGKIGCTQPRRVAATSVAKRVAEEFGCRIGEEVGYAIRFEDTTGPDTVIKYMTDGMLM
REILIDENLSQYSVIMLDEAHERTIYTDVLFGLLKKLVQKRRDLRLIVTSATLDAEKFSG
YFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPAGDILLFLTGQEEID
YACQCLYERMKGLGKNVAQLIPLPVYSALPSEMQSRIFEPAPPGKRKVVIATNIAEASLT
IDGIYYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESA
FHNEMPPTTIPEIQRINLGFTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGAL
DEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMITTGNIFYRPREKQAQ
ADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCYENFVQLRSLRRAQDVRKQLVAIMD
KYKLDVVSAGNNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPD
WVIYHELVMTTKEYMREVIVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHE
PNSWRLSKRRA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgatttcaaagaaactggattgaagaagctcgagtacttgtcactcgtttcc
aaagtttgtacggagcttgagagtcacctagggtttggcgataaggtattggctgagttt
ataattgaattggggaagaattgtgtgagtgtggatgatttctatgtgaaattgaaagag
aatggcgccgagatgcctgattattttgttcgtactttgttgactataattcatgctatt
ttgccccctgaattgaaattgggggatgataaggaggaggttggggaagggagtagttgt
aaatccagttttccgggtttgaatatcggggatagtaaggatagggttagggagttggag
agggagattgctttcgaggctgaggagaggaggcgtgggaaaggaccgagggaatgtatg
tatagggatggcggtagaggtaaaagtaagagtaggcacggaggtgaaagggagaggtgt
agagatagggatgttggagatgagaggggtgattataggaaagcaagtgggaatgagaga
gatggagggaacgagggtgatggtgaattaaagtgtgttgagccggagttgtataggatt
tatagagggagagtgtcgagggtgatggattcgggttgttttgttaggttagatgatttt
aggaataaagaggggttggttcatgtgtcacagatagcaagtaggcggattcccaatgct
aaggatgttgtgaaacgtgatcaggaggtttatgtcaaagtgatttctatttcaggtcac
aagttgagtctatctatgagagatgttgatcagaatacgggtgatgatcttttgcctctg
aagaaaagttctggggatgtggatgttgtgagggcaaatccttcagcttcccacaaggga
agtgcaaccaggaccagtctttcggggatcagaatcacggaagaggatgatgcgggccca
tcacgcagacctttgaagaggatgagttcacctgaaagatgggaagccaaacagctgatt
gcatctggtgttttaagtgtaaatgagtatcctatgtttgatgatgaaacagatggtctg
ctttatcaggaggaaggtgctgaggaagaactggaaattgaattgaacgaggatgaaccg
gcatttttaaacggtcaaacacgattttcaatggatttgtcaccagttaagatattcaag
aatcccgaagggtctttgagtcgtgcagcagcccttcagtcagctcttataaaagagagg
agagaagtgagggaacagcagcagagagccatgcttgattccatccccaaagatcttaac
agaccatgggaagaccctatgcctgagacgggtgaaaggcatctggcccaggagctgagg
ggtgttggtttgtctgcatattcggtacctgaatggaagaaagacacggacagtaaaatt
ctcacatatgggcagagatcgaagctgtccattcaagaacagaggcagagcttacccatt
tacaaattgaaaaaggaacttatacaggctgtgcatgataatcaggttctagttgtcata
ggtgagacgggttcgggtaagacgacacaagtgacacagtatcttgctgaagcaggttat
actacccatggcaagattggatgtacccagccccgtagggtggctgctacatctgtggct
aagagagttgctgaagagtttggctgtcgtataggtgaggaagtcgggtatgctatccgg
tttgaagataccacaggtccagacactgttataaagtacatgactgatggtatgctcatg
agagagattcttattgatgagaatttatctcagtactctgtcattatgcttgatgaagct
catgagaggacgatttacacagatgtcctttttggattgcttaagaagctagttcaaaag
aggcgtgaccttcgtttgattgtcacttctgccactttagatgctgagaaattttcaggt
tattttttcaactgcaatatatttaccatccctggaaggactttccctgtagagattctt
tacaccaaacagccagaaagtgactacctagatgcagctcttatcaccgttttgcagatt
cacttgacagaacctgcaggtgacatccttctctttttgactggtcaggaagagattgat
tatgcttgtcaatgcctttatgagaggatgaaagggttaggtaagaatgtagctcaacta
atccctttaccagtctacagtgcccttccaagtgaaatgcagtcccgtatatttgaacct
gctcctccaggaaagcggaaagtggtaattgcaaccaatattgccgaggcatcactaacc
atagatgggatatactatgtcattgatcctggttttgcaaagcaaaatgtctataatcct
aagcaagggcttgattcactggttataacgccaatctcacaagcatcagctaagcagaga
gctgggcgtgcaggtcgtacagggccggggaagtgttaccgcctttatacagagagtgcc
tttcacaatgagatgcctcctacgacaataccagaaattcagagaataaaccttggtttt
actacacttagtatgaaggcaatggggataaatgatctcctctctttcgattttatggac
ccaccttctcctcaagctttaatttccgctatggaacaactgtacagtctaggggctctg
gacgaggagggacttctcacgaaattgggtagaaaaatggctgaatttccacttgacccc
cccttgtcgaaaatgcttcttgctagtgtagaccttggttgtagtgatgaaattctgact
attattgccatgattacaactggcaacatattttataggcccagggagaaacaagctcaa
gcagatcagaagagagcgaaattttttcagcccgaaggagatcatctaactctgcttgct
gtatatgaggcttggaaagcaaagaacttttctggaccatggtgttatgagaattttgtc
cagttgcggtctctaaggagggctcaagatgttcggaagcaacttgtggcgattatggat
aagtacaaattggatgttgtgagtgctggaaacaatttcaccaagataaggaaggccata
acagcgggatttttcttccacgcagctaggaaggatccacaagaaggttaccggacactg
gtggagaatcaacctgtatatattcatcctagcagtgctcttttccagagacaacctgac
tgggttatctaccatgagctggtaatgacaacaaaggagtatatgcgtgaggtaattgtt
gttgatcccaagtggcttgtggaactggcaccaaggttctttaaagtggcagatccaact
aaaatgagtaagcgcaagcgtcaagaacgtattgaaccgctttacgacaggtatcatgag
ccgaactcttggcgcttaagtaaaaggcgtgcgtag
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integrated database retrieval system
