KEGG   Daucus carota (carrot): 108193648
Entry
108193648         CDS       T05350                                 
Name
(RefSeq) histone deacetylase 6 isoform X2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03082  ATP-dependent chromatin remodeling
dcr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108193648
   03083 Polycomb repressive complex
    108193648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dcr03036]
    108193648
Enzymes [BR:dcr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108193648
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108193648
   HDAC complexes
    Sin3A-HDAC complex
     108193648
    BRAF-HDAC complex
     108193648
    REST complex
     108193648
    SHIP complex
     108193648
    MiDAC complex
     108193648
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108193648
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108193648
  Chromatin remodeling factors
   NuRD complex
    108193648
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108193648
NCBI-ProteinID: XP_017215883
UniProt: A0A164UMJ7
LinkDB
Position
7:complement(39372360..39386602)
AA seq 432 aa
MATDGFSGASLPSPGSDATKRRVTYFYEPTIGDYYYGQGHPMKPHRIRVAHNLIKHYNLH
RKMEIICPFPAAPADIGKFHSEEYVDFLASVTPESSHDHEHARHLKSFKMGGDCPVFDGM
FGFCQASAGGSIGAAVKMNLQEADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKR
HRRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGHGQGKNYALNV
PLNDGIDDDSFQDLFRPVIRKVMEAYQPEAVVLQCGADSLAGDRLGCFNLSVKGHADCLR
FLRSFNVPLMVLGGGGYTMRNVARCWCYETAVAVGVEPDNKLPYNDYFEYFGPDYTLHVR
PTPVENHNSPADLEKIRNLLLEQISRLTHTPSVQFQTAPPVTRVPEQAEERMDYRPKPRI
WSGEDCESDAEA
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggccaccgacggtttctccggcgcctccctcccctcccccggctctgacgccaccaag
cgccgcgtcacctacttctacgagcccaccatcggtgactactactacggccaaggccac
cccatgaagccccaccgcatccgcgtggcccacaacctcatcaagcactacaatctccac
cgcaagatggagatcatctgccccttccccgccgcccctgccgacatcgggaagttccac
tccgaagaatacgtcgactttctcgcctcagtcaccccggaatcatcacatgatcatgag
catgctaggcacttgaagagcttcaagatgggcggggattgtccggtgtttgatgggatg
tttgggttttgtcaggccagtgctggggggtcgattggggcggcagtgaagatgaatttg
caggaggctgatattgcgattaattgggcgggagggctgcatcatgcgaaaaagtcagag
gcttcagggttttgctatgttaatgacattgtgctcggcattcttgagctgcttaaaagg
cacaggcgtgtgttgtatattgatattgacatccaccatggggatggtgtggaagaggcc
ttttatactacagacagagtaatgacggtgtcttttcataaatttggtgacttctttcct
ggaactgggcacattaaagatgttggacatggtcagggcaagaattatgcccttaacgtg
ccactgaatgatggtatcgatgatgacagttttcaagacctatttcgaccagtaatccgt
aaagtcatggaggcctaccaacctgaagcagttgtgctccaatgtggagctgattcactg
gctggtgacaggttgggatgcttcaacttgtcggtaaaaggtcacgccgattgcctgagg
ttcctcagatctttcaacgttcctctaatggtccttggtgggggtgggtatacaatgcgg
aatgtggcccgatgctggtgctatgagacagcagttgcagttggggtggaacctgacaat
aaattgccttacaatgattactttgagtactttggcccagattacacccttcatgtgcga
ccaactcctgttgagaaccacaactctccagccgatctagagaagatcaggaatctcctc
cttgaacagatttctagattgactcatacacccagcgtacagtttcagacggctccacca
gtcaccagagttccagaacaggcagaggagagaatggattatagacctaagccccgtata
tggtctggcgaggactgtgaatctgatgctgaagcttga

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