Daucus carota (carrot): 108193911
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Entry
108193911 CDS
T05350
Name
(RefSeq) autophagy-related protein 18b isoform X1
KO
K17908
autophagy-related protein 18
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
108193911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108193911
03029 Mitochondrial biogenesis [BR:
dcr03029
]
108193911
Membrane trafficking [BR:
dcr04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
108193911
Mitochondrial biogenesis [BR:
dcr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108193911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
BCAS3_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
108193911
NCBI-ProteinID:
XP_017216250
LinkDB
All DBs
Position
7:23419453..23425301
Genome browser
AA seq
364 aa
AA seq
DB search
MANSSTSNPILCASFNQDNSCFAIGTRDGFRLFDANTGRLLYERAVGAFIIVEMLFSSDF
LAIVGAGEQPSLSPRRLCLFNTTTGMALRELNFLTSIVSVHLNRKRLIVVLQENTYIYDI
NSLAILDTIDTVPNFKGLSAFSPSLDGCFLALPANATKGSVLVYNVMDLQSHCEIDAHNS
PLSALALSSNGMYIATASEQGTIIRVHLIAEATKQSYSFRRGTYPSTIFSLSFGPATELP
DILAATSSSGSLHVFSLGLAINQRSRRSNSFLGSFLPHSVSDSLDPAHHRILHNAVPAGI
RSYAVIRKVEKVADRSPSGASVCRATISLITYNGYFLEYILNINQHGECSWNLEREFNLL
TLLP
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcttcaacttctaacccaattctctgcgcttccttcaatcaagataacagc
tgctttgcaattggaacgagggatggcttcagattatttgatgctaatacagggcgcctc
ctttatgaaagagctgttggggcctttataattgttgagatgcttttcagctcagatttt
cttgctattgttggagctggagaacaaccctctttatcgccacgtcgtttatgtttgttt
aatactaccactggaatggcactccgagaactaaattttttaacttcaattgtttccgtt
catttaaatagaaaaaggctaattgtagttctacaggagaacacgtacatatatgacata
aacagtctagctatcttggacacaattgacacggtaccaaattttaaaggactttctgct
ttttcacctagtttggatggctgcttcttggctcttcctgcaaatgcaacaaaaggatct
gtgttagtttacaatgtcatggacctccagtcacactgtgagatagatgctcacaactcg
ccattgtctgcattagctctctcttcaaatggaatgtacatagcaactgcatctgaacag
gggaccattattagagttcatctcattgcagaagctactaagcagtcttatagcttccga
aggggtacatacccatcaactatattttccttatcatttggtccagccacggaacttcca
gacatacttgcagccacgagttcttcaggttccctgcatgttttctcgcttggattagct
ataaatcaaagaagcagaagatcaaatagctttctcgggtcgttcctacctcactctgtc
agcgattcactagacccagctcatcatcgtattcttcacaatgctgttccagctggaatt
agaagttatgcagttattcggaaggtagagaaagttgcagacaggagtccatccggagcc
tcggtttgtagagccaccatatctttgataacatataatggatacttcctggagtacatc
ttaaatatcaaccaacacggcgaatgttcatggaatttggaacgtgaatttaatctttta
acacttttaccgtag
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