Daucus carota (carrot): 108193946
Help
Entry
108193946 CDS
T05350
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108193946
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108193946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF1565
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
108193946
NCBI-ProteinID:
XP_017216292
UniProt:
A0A164T825
LinkDB
All DBs
Position
7:complement(14729724..14732633)
Genome browser
AA seq
411 aa
AA seq
DB search
MAVSDKSIVVSAFVLLLLFVRAMATVKDQLSNKLLEDVDGNENAVSNPDEVAAMVDMSTR
NSTERRRLGDFSCRTGNPIDDCWRCDSNWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTD
SSDDDLHNPRPGTLRHAVIQERPLWIVFKHDMVIQLKKALMMKSFKTIDGRGANVHIAHG
GCITIHYATNVIIHGLHIHNCKPTENADGDAISISGSSHIWVDHNSLSNCTDGLVDAVMG
STAITISNNHFTHHNEVMLLGHSDSYVKDKQMQVTIAYNHFGEGLVQRMPRCRHGYFHVV
NNDYTHWEMYAIGGSASPTINSQGNRYLAPSNPFAKEVTKRVQTPIGRWKGWNWRSEGDL
LLNGAYFTPSGAEATATYARASSLGAQSSSMVGTITSGAGVLGCVRGHQCY
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctctgacaagtcgattgttgtttctgcatttgtgctgttactactcttcgtc
agagctatggcgactgtcaaggatcaactctcaaacaaattgctggaagatgttgatggg
aatgagaatgcagtttctaacccggacgaggttgctgccatggttgatatgagcacccgg
aacagcactgagcggagaagattgggtgatttttcgtgtagaacaggaaatcccatagat
gactgctggcgttgtgactccaactggcatcgcaaccgcaagcgccttgctgactgtggc
attggttttggccgaaatgccattggaggccgtgatggtcggttctatgtggtaactgat
tctagtgatgacgaccttcataaccctagaccgggtactctgcgccatgctgttattcag
gagaggcctctttggattgttttcaagcacgacatggtgatccaactgaagaaggcactt
atgatgaagagtttcaaaacaattgatggtcgtggcgcgaatgtccacattgctcacgga
ggctgcataaccattcactacgcgaccaatgtcataattcatggtctgcatatccataat
tgtaagcccactgaaaatgctgatggagatgccatttccatctccgggtcaagccacata
tgggttgatcacaattcattatctaactgtactgatggccttgtcgacgctgtcatgggc
tcaaccgctataacaatttccaataatcacttcacacatcacaacgaggttatgttgctc
gggcatagtgattcctatgtgaaggataagcaaatgcaagttacaattgcctacaaccat
ttcggagaaggcctagttcaaagaatgccaagatgtagacatgggtattttcatgtagtt
aacaatgactacactcactgggagatgtacgcaattggtggaagtgcaagtcctaccatc
aacagccaaggaaacagataccttgccccgtcgaatccttttgcaaaggaggtgacaaag
agagtacagacgccaattgggcgctggaagggttggaattggagatcagagggtgacttg
ttactcaacggagcctacttcactccatccggagctgaagctacagcaacttatgccaga
gcttcaagcctaggggcacaatcttcttccatggttggtacaatcacttctggagctggc
gttcttggttgtgttagaggccatcagtgctattaa
DBGET
integrated database retrieval system
