Daucus carota (carrot): 108195116
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Entry
108195116 CDS
T05350
Name
(RefSeq) chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1
KO
K27707
chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108195116
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108195116
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CRS1_YhbY
Tup_N
HIP1_clath_bdg
Motif
Other DBs
NCBI-GeneID:
108195116
NCBI-ProteinID:
XP_017217553
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Position
7:complement(37275535..37280638)
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AA seq
734 aa
AA seq
DB search
MTSILFLPPSSSSSTFLHNCSSIPPKFSFSSGFNHSKKDDKTRAKASDSDDSFSAQPNLS
TRLPTPPWMKRGPVLGDDIEPSKLRKDRNFSNDRGEENEGGQSLTKRVKGGRGKKAMGKI
FRSIGKLQETCLEESEEFRKSPDQIKLDFLMGGVEEDEFSGFGEQMPWERDERVFFRRMK
KEKVVTAAELSLDSGLLERLRGEAAKMKKWVKVKKAGVTWDIVSQIRFLWKNNELAMLKF
DIPLCRNMDRAREIVELKTGGLVVWSKKDALVVYRGYIYQYPKPFIRKNDNLGKNDTEEE
IIPIEGSLYEREANRLLDGLGPRFIDWWRPKPLPVDADLLAEVVPGFRPPFRLCPPKTRS
KLTDDELTYLRKLSRPLPTHFVLGRNRNLQGLAAAILKLWEKCHIAKIAVKLGALNTNNA
EMADELKCLTGGVLLLRNKFIIIIYRGKDFLPCRVANLVVEREIELRSCQLQEEAARAEA
IGNICLTVEPSNYDSTVGTLSEFQDIRSNRGDLEGEDMKVNVQFEAEKRKLKKELREQKH
KLSKLKLKIGRSSKNLRQINSAWRPAELDADQEIVTPEERECLRKIGLKMDSTLVLGRRG
VFDGVIEGLHQHWKHRELVKVITKQKVFSHIVNTARLLQRQSGGILISVEELKEGHAIIL
YRGKNYKRPLKLVSENLLSKREALERSLEMQRVGSLKFFANQREKAISDLRRELSVNMQA
EVPEKIGFQREPEE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgacctccattctttttcttcctccatcatcaagctcctccacttttcttcacaattgt
agctcaattccacccaaatttagcttctctagtggctttaatcacagcaaaaaagatgat
aaaacaagggctaaagcttctgattctgatgattctttttcagcacagcccaatttgagt
actagattgcctacacctccatggatgaagagaggccctgttcttggtgatgatatagaa
ccctcaaaattaagaaaagataggaactttagcaatgatagaggtgaagaaaatgagggt
gggcagtcattgactaaaagggttaagggtgggagaggaaagaaagcaatgggcaagatt
tttcggagtatcggaaagcttcaagaaacttgtttggaagaaagtgaagaatttaggaaa
agcccagatcaaattaagttggattttttgatgggaggggttgaggaggatgagttttct
ggtttcggagagcaaatgccttgggaaagagatgagagagtgttttttaggaggatgaag
aaagagaaagtggtgactgctgctgaattgagtctcgatagtgggttacttgagaggttg
agaggcgaggctgcaaagatgaaaaagtgggtcaaggtgaagaaagctggggtgacttgg
gatattgttagtcagattcgatttctttggaagaataatgagcttgccatgcttaaattt
gatattcccttgtgtcggaatatggacagagctcgagagattgtagagttgaagactgga
ggtttagttgtgtggagtaagaaagatgcactcgttgtctacagaggatacatatatcaa
tatccaaaaccttttatcaggaagaatgacaacttagggaaaaatgatactgaagaggag
atcataccaatagaaggatcactgtatgaaagggaagcaaatagattattggatggcttg
ggacctcgtttcattgattggtggagaccaaaacctttgccagtggatgcagacttgctt
gcagaagtggttccaggatttagaccaccattcagactttgcccaccaaaaactagatca
aaactgactgatgatgaacttacttacttgaggaaactttctcgccctttacccacacat
tttgttttaggaagaaacagaaatctccaaggcttggctgcagccattttgaaactgtgg
gagaaatgtcatattgcgaagatcgctgtgaagttgggagctcttaatacaaacaatgct
gaaatggcagatgagctcaagtgtctgacaggaggagttctgttattgcgtaataaattc
attataataatttacagaggcaaggactttcttccttgcagagttgcgaaccttgtggta
gagagagaaatagagcttagaagctgccaacttcaagaagaagctgcacgcgctgaagca
attggaaacatttgtttgactgttgagccatcaaattatgacagcactgttggaaccctg
tcagagttccaggatattcggtcaaaccgtggggacctggaaggtgaagacatgaaggtg
aatgttcaatttgaagctgaaaagagaaagctaaaaaaggaattgagagagcaaaaacac
aaactctcaaagcttaaattgaagatagggaggtcaagtaaaaatctacggcaaataaat
tcggcatggagacctgctgaactggatgctgaccaagaaatagtaaccccagaagagaga
gaatgtttaaggaagataggtctgaagatggatagcactctggttcttggaaggcgaggg
gtgtttgatggtgtcatagaaggattgcatcagcactggaagcacagagaactagtgaag
gtgattacaaagcagaaagtgttctcccatattgtaaatacagcaagacttcttcagaga
caaagtggtggaatacttatttcagtagaggagctgaaagaaggccacgctataattttg
tatcgtgggaaaaactataaacgccctttaaagttggtatcggagaatcttttaagtaaa
agagaagcactagaaaggtcacttgaaatgcagagagttggatccttgaagttctttgca
aatcaaagagagaaggcaatttcagatttgagaagagaactatctgttaatatgcaggct
gaagtgccagagaaaataggatttcaaagagaacctgaagagtaa
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