Daucus carota (carrot): 108195257
Help
Entry
108195257 CDS
T05350
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108195257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108195257
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108195257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
108195257
NCBI-ProteinID:
XP_017217699
UniProt:
A0AAF1B7U8
LinkDB
All DBs
Position
7:complement(29219637..29226849)
Genome browser
AA seq
205 aa
AA seq
DB search
MVMSPAVNTYPLSSYTFGSKEAKIEKDTSVADRLARMKTNYVKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSSNLQPNWQIGECVATWW
RPNFETIMYPYCPPHISKPKECKRLYLIHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFNMINNETNDK
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgtcgccggcagtaaacacgtacccactctcaagctacactttcggtagcaaa
gaagccaagattgagaaagatacttctgttgctgatcgtcttgcccgtatgaaaaccaac
tatgtgaaggaaggaatgaggacttcggttgaggggatattactggtacaagagcataac
catccccatattcttcttctgcaaataggcaataccttctgtaaacttcctggcggtcgt
ttaaagcctggagaaaatgaaatcgaagggctgaaaaggaaattatctagcaaattggct
gcaaactcttcaaatctacagccaaactggcagattggtgaatgcgtagctacgtggtgg
aggccaaactttgaaactataatgtacccgtactgccctccacacatctcaaagcccaag
gagtgcaagaggctttacctaatccacttatcagaaaaagagtactttgctgttcctaaa
aacttgaaactccttgctgttcccctgtttgagctgtatgataatgttcagagatatgga
cctgtaatttctacaattccccaacagctttcaagatttcagttcaacatgatcaacaat
gaaacaaatgacaaatag
DBGET
integrated database retrieval system
