Daucus carota (carrot): 108195275
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Entry
108195275 CDS
T05350
Name
(RefSeq) probable pectate lyase P59
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108195275
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108195275
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108195275
NCBI-ProteinID:
XP_017217721
UniProt:
A0A161ZLX6
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Position
7:31590169..31592788
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AA seq
444 aa
AA seq
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MEGTKLTSCLILLACFAAFIPTLNAQEIELEDASYWRERALIAYNRTLGAYKPYPHLVTS
HTNEQVRRMLENTTNDTRRVLRGNKYKGPCMATNPIDNCWRCNPEWADNRFRLADCGIGF
GKPAIGGKGGPIYVVTDPSDEDMVNPKPGTIRHAVIQKGPLWIIFGRDMTIRLNQELIME
SDKTIDGRGAKVHIAYGAGITIQFVNNVIIHDIRVHDIVKGSGGMIRNSVDHFGFRTESD
GDGISIFGSTNVWIDHVSMSKCSDGLIDAIEGSTAITISNSHFTDHNDVMLLGASNHQVK
DKHMQVTIAFNHFGKRLIQRMPRVRYGFVHVVNNDYTHWNMYAIGGSQAPTIICQGNRFI
APRSDRIKEITKREYAEESEWKSWNWRSEGDLMMNGAYFVESGDPATVENFERDFNLVKA
AKGIEAPLITKFAGALNCLPGSPC
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggagggaaccaagttgacttcttgtttgatcttgttagcttgttttgcagcttttatt
cccaccctcaatgctcaagaaattgagctggaggatgcttcttattggagggaacgtgct
cttatagcttataatagaactctcggtgcttataagccgtatccacatcttgtcactagt
cacaccaatgaacaagttcgcaggatgctggaaaacacaaccaacgacacaaggagggtc
ctcaggggaaataaatataagggtccatgcatggccacgaacccaatcgacaattgctgg
agatgcaatccagagtgggctgataaccgcttcaggcttgcagactgtggaatcggattt
gggaaacccgcgattggcggaaagggtggaccaatttatgtggtgactgacccttctgat
gaggacatggtgaatcctaagcctgggactatacggcatgctgtgattcagaaaggtcct
ctgtggattatttttgggcgtgatatgaccattaggttgaaccaggagctaattatggaa
agtgataagactattgatgggcgtggagctaaagtccatattgcttatggtgctggaatc
actatccagttcgtaaacaatgttattatccatgacattcgcgtccatgatattgtcaaa
ggtagcggtggcatgattagaaattctgtagatcattttggatttaggacagagagcgat
ggcgatggcatatcaatcttcggttctacaaatgtctggattgatcatgtatccatgtcc
aagtgctctgatggtctcattgatgctatcgaaggttccactgccattactatctctaac
agtcatttcaccgaccataacgatgtgatgctccttggtgcaagtaatcatcaagtgaag
gacaagcatatgcaagttacaatcgcgttcaaccactttgggaagaggttgattcagaga
atgcccagagtccgatatggatttgttcatgtggtaaataatgactatactcactggaat
atgtacgctatcggtggcagccaagcccctacaatcatttgtcagggtaaccgatttatc
gctcccaggagcgatcgtataaaggagataaccaagagagagtatgctgaagaatcagag
tggaagtcgtggaactggcgatccgagggtgatttgatgatgaatggagcatacttcgtc
gaatctggagatcccgcgacagttgagaatttcgaaagagattttaaccttgttaaagca
gccaaaggaatagaggcgcctctgatcaccaaatttgcaggtgctctgaattgtctgcca
ggatctccatgttga
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