Daucus carota (carrot): 108195342
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Entry
108195342 CDS
T05350
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108195342
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108195342
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108195342
NCBI-ProteinID:
XP_017217793
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Position
7:complement(38577530..38579836)
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AA seq
443 aa
AA seq
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MKMKGLKHALCFVYVGIAMVSAASVELNVTKQDEMIWKARAENAKQHAMAAFDPHPHDVT
NQLNSHVHKATEKDHNSTRRGLHGIKRTGPCRATNPIDQCWRCDPNWMKNRMRLADCALG
FGRNTTGGKGGKIYVVTDPSDTDMINPKPGTLRHAVIQAEPLWIIFKHGMIIRLNEELIM
TSNKTIDGRGAQVHICSGAGLTIQFVQNVIVHNLHIHDIKAANGGMIRSSVDHYGLRSRS
DGDGISIFGSSHVWIDHISMFNCQDGLIDVVEASTAVTISNCHFTRHNEALLFGATDSYT
EDKIMQITLTFNHFGKGLVQRMPRCRFGFVHVVNNDYTHYLMYAVGGSSNPTILSQGNRY
VAPKDPNAKEVTKRDYADESEWKHWIWKSQEDLMENGAFFVESGDPKHVFPTGKDMIVPK
PGTLVSKLTRFAGAIACKENKPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaaaggtttgaagcatgcattgtgttttgtatatgttggcattgcaatggtt
tctgctgcttcggtggagctcaatgtcacgaaacaggacgagatgatatggaaggcaaga
gctgagaatgcaaaacaacacgcgatggctgcttttgatcctcatccccatgatgtcacc
aatcaattgaatagccatgtccacaaggccacggagaaggatcataacagcacgagaagg
ggcttacatggaataaagagaaccggcccttgtagagctacgaaccctatagaccaatgc
tggagatgtgatccgaattggatgaaaaatcggatgaggctagcggattgtgcccttggg
tttggccgcaacaccacaggtggcaaagggggcaagatatatgtagttactgatccatcc
gacactgacatgattaatcctaaacccgggaccttacgacatgcagtgattcaagccgag
cctctttggatcatatttaaacacggcatgataattagattaaatgaagaacttatcatg
acgagtaataagactattgatggacgcggagctcaagttcacatttgttcgggagctgga
ttgacgatacaatttgttcagaatgtgattgtgcataaccttcacattcatgatattaag
gctgctaatggtggaatgatcagaagttccgtggaccattatggtcttcggtccaggagc
gatggtgatggtatctcgatttttggatcttctcatgtttggattgatcatatttctatg
ttcaattgccaggacgggttaattgatgttgtcgaggcttccaccgcggttaccatctca
aattgccacttcacaaggcataatgaggcgcttctgtttggcgcaactgacagctacaca
gaggacaaaataatgcagataacgttgacattcaatcatttcgggaaaggattggttcaa
agaatgccgagatgtcgattcggatttgtgcatgtagtcaacaatgactacactcactat
ctaatgtacgcagttggtggaagctctaatcccaccattcttagccaggggaaccgctac
gtagctccaaaagatcccaatgctaaagaggttacaaagagagactacgcagacgaaagt
gaatggaagcattggatatggaaatcacaggaagacctgatggagaacggagcattcttc
gtcgaatccggggatcctaaacatgtgtttcctactggtaaagacatgatagttccgaag
ccagggacgcttgtaagtaagctcacaagatttgccggtgctattgcctgcaaagaaaac
aaaccatgttaa
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