Daucus carota (carrot): 108195402
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Entry
108195402 CDS
T05350
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108195402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108195402
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108195402
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
108195402
NCBI-ProteinID:
XP_017217849
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Position
7:complement(34744514..34748274)
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AA seq
460 aa
AA seq
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MEEDLDDIEALKYDDLDHVSKLQKTQRYIDIMQKVESALEKGSDVSKHGGVDDPEYKLVV
DCTTLLLDIENEIIILGNFIRDKYRLKFPELESLVHDPIDYARVVKKIGNEVDLTLVDLQ
GLVPSAIIMVVSLTASTTSGKPLVAEDLHKTVEACDMAITLDSAKKKVLDFVQSRMAYIA
PNLSAIVGSAVAAKLMAAAGGLSALTERPACNIKFLGAKRKNLAGFSTMTCQFPVGSYIE
QTEIFQSTPPALRTCVSRLLASKSTLAARVDSAGGDATGGLGSALREEILKKIDKWQQPS
PAKQVKPLPVPCTEPKKKRGGRRLRKMKERYAVTDMRKLANRVQFGVPEVSSLGDGLGEG
YGMLGQAGSGKLRVSAGQNKLTAKIAKKIKERSFGSGATSGLTSSLAFTSVQGIELSNPE
ALANQLGSGTQSTYFCDTGTFSKIKRHCKPMQCNREKIYE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatttagatgacattgaagcccttaagtatgatgatctggatcatgtatcc
aagctgcaaaaaacccagcgttatattgatatcatgcagaaagttgaaagtgcactcgag
aagggatctgacgtctccaaacatggtggtgtcgatgatccagaatacaaactggtcgta
gactgcaccacgttgttgttggatatcgagaatgaaattattatccttggtaattttatc
cgtgacaagtatcgactaaaatttccagagcttgaatcacttgttcatgatccaattgat
tatgcccgtgtggtgaagaaaattggcaatgaagttgatctaacacttgttgatctacaa
ggactagtgccctcggctattattatggttgtttcactcacggcgtcaaccacaagtggc
aagccacttgtcgctgaagatctccacaagacggttgaggcatgtgacatggcaattaca
ttagattcggcgaagaagaaggttcttgattttgtacaaagtagaatggcgtatattgct
ccaaacctctctgctatagttggtagtgctgttgctgcaaaattgatggcagccgcgggt
ggtttatcagcactgactgagaggccagcatgcaatataaagtttctgggtgccaagaga
aagaatttagcaggattttcaaccatgacttgtcagtttcctgtagggtcgtacattgag
caaacagaaattttccagagcactcctcctgctttaagaacgtgtgtttctcgtctgtta
gcttcgaaatccacacttgctgcacgtgtggattctgctggaggagatgcaactggggga
ctgggaagtgctttgcgcgaggagatacttaagaagattgataagtggcaacaaccgtct
cccgcaaagcaagtgaaacctcttcctgttccttgtactgagccgaaaaagaagagaggt
ggtcgtagattacggaaaatgaaagaaagatatgctgtaactgacatgcgtaagctagcc
aacagggtgcaatttggagttccagaagtgagctctttgggagatggtcttggggaagga
tatggaatgctgggccaggctgggagtggaaagttgcgtgtatcagcaggtcagaacaag
ctcactgctaaaattgcaaaaaaaattaaggagaggagctttggtagtggtgctacctcc
ggactgacttcaagtctagcctttacctctgttcaggggattgagctctccaatccagag
gcactagctaatcagctcggcagtggaacacaaagcacctacttctgtgatacaggaact
ttttcgaagataaagagacattgcaagcccatgcagtgcaacagggaaaaaatatatgaa
tag
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