Daucus carota (carrot): 108195448
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Entry
108195448 CDS
T05350
Name
(RefSeq) polygalacturonase At1g48100
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Module
dcr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108195448
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108195448
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
End_N_terminal
NosD
Motif
Other DBs
NCBI-GeneID:
108195448
NCBI-ProteinID:
XP_063936985
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Position
7:complement(9411311..9414091)
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AA seq
473 aa
AA seq
DB search
MKQNKKLSVLLSFLLILVYLTTFLAISTEARRHHSKKNRTHKHKKQRHDHHVPAPFPGHG
NTSSNFNVLSFGAKGDGVSDDSKALEEAWKAACKVEGSILRIPSNYKFLIKPITLKGPCM
PHLLFQIDGSLLAPPKVGAWPKSSLFQWINFKWIHNFTIQGTGTVDGQGSNWWATAFPSQ
VAFTQALSKNKIPYMKPTAIRFYESYNVTIRDISIINSPLCHLKFDNSGGVNIDNITIIS
PESSPNTDGIHLQNTRDVEIQHSSIGCGDDCVSIQTGCSNVHIHHLNCGPGHGISLGGLG
KDKSVACVSDITVENIIMQNTLYGVRIKTWQGGAGLVKNITFSHIQVSDVKVPIMIDQYY
CDKHLCKNQTDAVAISGVKYDQIIGTFSVQPIHLACSNSIPCINVDLTNVQLRPTSSKLG
YGSGGLQHEGLCWNSYGKSKAPLVPSSIDDCLMRGSGGSGPQKIAKSRYENVC
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagaacaagaagctatcagttctccttagttttcttctcattctagtttactta
actacatttttagcgatttcgacagaggctaggagacatcacagcaagaaaaacagaact
cacaagcacaagaaacagaggcatgaccatcatgttcctgctccatttcctggtcatggc
aatacttctagcaatttcaatgtcttgagcttcggagctaagggcgacggagtttctgac
gattccaaggcacttgaagaagcatggaaggctgcatgtaaagtagaaggatcaattctg
cgaattccatcgaattacaagtttctgattaagccaataacactgaaaggtccatgtatg
cctcatttgctttttcagattgatgggagcctcttggctcctccgaaagtaggtgcatgg
ccaaaatccagcttgtttcagtggattaacttcaaatggattcacaacttcaccattcaa
ggtacaggtactgttgatggccaaggttccaactggtgggctactgcttttccgagccaa
gttgctttcactcaggccttatccaaaaacaaaataccatatatgaaaccaacggcaata
agattttatgaaagttacaatgtgacaatccgcgacataagtatcataaacagtcctctg
tgccatctgaaatttgataattctggaggggtgaacatcgacaatatcaccatcatttca
ccagaatctagcccaaacacggatggcattcacctgcagaacacccgggatgtagaaatc
cagcattccagcataggctgcggggatgattgtgtgtcgattcaaactggctgctccaac
gttcatattcaccatctaaattgtggccctggacatggaataagcttaggaggattaggg
aaagataaaagtgtggcatgcgtttctgatatcacggttgaaaatattatcatgcaaaac
accctctatggagtacggatcaagacatggcagggtggagctggattagtgaagaacata
acattttcacacattcaagtttctgatgtcaaagttcccataatgattgatcaatattac
tgcgacaagcatttgtgcaagaatcagacagatgcagtagcaatatcaggagtaaaatat
gaccaaatcatcggcactttctcagtgcaacctattcatctggcttgtagcaacagcatt
ccatgcataaatgtcgatctcactaatgttcagttaaggccaacatcttcaaaattaggg
tacggatccggagggttacaacacgaaggattgtgctggaattcttatggaaaatcaaaa
gcccctctggttccgtcaagcattgacgattgcctaatgaggggtagtggcggttcagga
cctcagaaaatagcaaaatctcgttatgaaaatgtttgttga
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