Daucus carota (carrot): 108195870
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Entry
108195870 CDS
T05350
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108195870
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108195870
Surveillance factors
Other surveillance factors
108195870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
108195870
NCBI-ProteinID:
XP_017218364
LinkDB
All DBs
Position
7:22395198..22402978
Genome browser
AA seq
1617 aa
AA seq
DB search
MAERKLNLPDDLLSSKSADQSWIPHVEASGGNADEKMLGMLDESKDLLVSESSIPLSPQW
LYAKPSDTKMEMRAPSTLSLGNSADANQKEAWRPEGADEKKDWRRIPTDADSGRRWREEE
RETGLLGRRDRRKTDRRVENAPGRESPDNRTVPAADRWHDVNNRGASHEAKRDGKWSSRW
GPDDKEKEARTEKRADAEKEDVHGDNQMNVNNNRAVSERDADARDKWRPRHRMEGNSSGP
GSYRAAPGFGPERGRVEGSNVGFAVGRGRASAVVRPPSSGPIGDADFDKERSVPGKLSFS
REAYCYPRAKLLDIYRRHQHDPSFATMPDSLEEIPSVTQLTTVDPLAFVAPSIEEEAIVA
DIWNGKVINSGSSYNAYRKAKSSENSGDVVDLEDTTSKQGSLPVSISEMLVDSSERYQDD
DVNQADDARFFPNEGDVHHDMARKTPMTLEGIGLDKITSKMSISNDSSRAQELSDAYQFA
SHMKNSDLAFAKHPLFDGIESNSSLSNVTTLAVDLSSSHDVKSSEQYYFGNKQVSEERPD
YSEYQLERITPPEELSLFYCDPQGEIQGPFLGVDIISWFEQGFFGADLPVRLADASEETP
FRQLGDVMPHLQGMTEYASNPDRSSKVETSGAFEGMLDAKLSASLPVPEMMDNPRWQMSD
FDGISANNVQSRMSEHEGLLDVPYSEGQSFQEFVAQDEEIVFPGRPGSSGNPGRTSRGAG
DLPASMFGEPSAKELLDSRMQSSKSNQLHPFGLLWSELEGTYSRNDNNSNMPFNGGIQDQ
HMNSIGLRGASLASADSTHGADSWPDAYRSNMPSEANMYHDVMDDIQLSRFDQESKRFDL
AENLLPQQFQQHHLQQHNMLSHGHLNDPILERVSNRNMMHQQQLASQTGQDLEHLLALQL
QQQRQLQLQQHHQLQQQQQQQILLKEQQQTQARHQLLEQLLQNQMGEPVRGQSRLDAVRS
INAVDQVLLNQHMVNELQRPHHLSSNVDPSIEHLIQAKFGQTMHHGHQQSDLMDLISRSK
HGQMQPMEHQILQEQLNGRQLAMGLRQRVEMEERQRGSAWPVDESIQFLGNSGGGAHRSG
SAGIGQLEFYQQQQRPSPEEHMSNLERNLSLQDRIQRGLYNPSLMQFERSMSLPGGGPGM
SLDMINSMARGQGLGMQEPSARMQPAGQGPGFSGVYSHQSSHPSSANLFHPSHLDAVEGQ
WSENNGQPPSDWMDSRIQQLQINERHKRQSEAGRAAEDPSLWMSAGSSDDTSKRLLMELL
QQKPGHQPTEQLDATGVSYDKRLPPSSHSNHSFNLLSDREPDLNQPFAMGSYGSNSGGPL
HNKVIEEQVGLETTERFLLRSNSGALNDRAQYFSGMNENSQAIYPNANMTGKSSTDFLDL
ERKMHGSKSEVGTRKISASESSDEFVQHEGVAASNRGDMPNNVMSRHTSQAGAAAGIYDN
KMQRSSSVGEDVKDRMAAVPLKRQENVLSKRPPVSRAASSQEGLSELASETIVRGKNILG
GSTLPSEAGRREAGGNPPNQTAEILSSKKDVRYRRTSSCGDADVSETTSFSDMLKSNAKK
PPQPESHAAAAATESSEGGRSGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQHADDL
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagaaagctcaatctccccgacgatctcctctcctccaaatctgccgatcag
tcctggatccctcacgttgaagcttctggagggaatgcagatgaaaagatgttagggatg
cttgatgaatcaaaagatctattggtatctgaaagcagcattccgttgtctccccagtgg
ctttatgctaaaccaagcgacaccaagatggaaatgcgggcacctagcactttatcactt
ggaaattctgctgatgccaatcaaaaagaagcttggcgtccagagggagctgatgaaaag
aaggattggagaagaataccgactgatgctgatagtgggcgacgctggcgtgaggaagaa
agagagaccggcttgcttggtagaagagatcgcaggaaaactgatcgtcgtgtagaaaat
gctcctggacgagaaagcccagataacagaactgtgcctgcagctgataggtggcatgat
gttaataaccgtggtgccagtcacgaagctaagcgtgatggcaaatggtcatcaaggtgg
ggtcctgatgacaaagagaaggaagctcgaactgagaaaagagcagatgctgagaaggaa
gatgttcatggtgacaatcaaatgaatgtaaataacaaccgtgcagtttctgagcgtgat
gcagacgcgcgtgacaagtggaggccacgtcatagaatggagggaaactctagtggacca
ggttcttaccgtgctgcaccggggtttggaccagaaagaggacgagtagagggttcaaat
gtggggtttgcagttggacgtgggagggctagtgcagttgttcgccctccctcttctggt
cccattggtgatgcagattttgacaaggagagaagcgtacctgggaaactaagcttttca
cgtgaggcgtattgctatccgagagcaaagcttcttgatatataccgtagacaccagcat
gatccgtcttttgctaccatgcctgacagtttggaggaaataccttctgtaacacaacta
actactgttgatccactagcttttgtggctcctagcatagaggaggaggccattgttgct
gatatatggaatggaaaagttatcaatagtggctcatcatataatgcgtatagaaaggct
aaatcaagtgagaattctggtgatgtagtagacttggaagataccactagtaaacagggt
agtttgcctgtgagtatatcagagatgctggtcgattcctcggaaagataccaagatgat
gatgtgaatcaggctgacgatgctagattttttcccaatgagggagatgttcatcatgat
atggcacggaagactcccatgactctcgaggggataggtttggataaaattacatcgaaa
atgtcaatcagtaatgatagcagtcgtgctcaagaattgagtgatgcttaccaattcgct
tctcatatgaaaaattctgatttagctttcgccaagcatcctcttttcgatggaattgaa
tccaactcttcacttagcaatgttactactcttgctgttgatctaagctcgtcacatgat
gttaaatcctcagagcagtattattttggcaacaagcaagtatcagaagaaagaccagac
tatagtgaatatcagctggagaggattaccccaccggaggagttgagccttttctattgt
gatcctcagggagaaattcaggggccttttcttggggtagatataatttcatggttcgaa
caaggtttttttggagcagacttgcctgtgcgcttggcagatgcttctgaggagacacct
tttcgacaattgggtgatgtcatgccacacctacaaggtatgaccgagtatgccagtaac
ccagatagaagctctaaagtagaaacctctggagcatttgaggggatgttggatgccaag
ttatcagcttctcttcctgtacctgaaatgatggacaatccacgatggcaaatgtctgat
tttgatggtatctcagcaaataatgtgcagtcaagaatgtctgagcatgaaggtttattg
gacgttccttattctgagggtcaatcctttcaagaatttgttgctcaagacgaagaaata
gtttttcccggacgacctggaagtagtggcaaccctgggagaacatccaggggtgcaggt
gatctccctgcaagtatgtttggtgaaccttctgcaaaggagttgttagattctcgcatg
cagagctccaaaagtaaccagttgcatccatttgggttattatggtctgaacttgaagga
acatattcgaggaatgataataactcaaatatgcctttcaatggtgggattcaagatcag
cacatgaactctattggtctaaggggtgcttctttagcttcagcagattcgactcatggt
gctgattcatggcctgatgcttatagaagcaacatgccgtctgaagcaaacatgtatcac
gacgtcatggatgatatacagttgtcacgttttgatcaagaatcaaagcgctttgattta
gcagaaaatcttttacctcaacaatttcagcaacatcatctgcaacaacacaatatgtta
tctcatggacacctgaatgatccgatcctggagcgagtttcaaataggaacatgatgcac
cagcagcagttggcgagtcaaacaggacaagatctggaacaccttttggcactgcagctt
cagcagcaacgacaacttcagcttcaacaacaccaccagctgcagcagcaacaacagcag
caaattcttctaaaagaacagcagcagacacaagcccgacatcaactccttgaacaattg
ttgcagaatcaaatgggtgaacctgttcgtgggcagtctcgtcttgatgctgtaaggtct
attaatgctgtagatcaagttttgttaaatcagcatatggtaaatgaattacaacgtccc
catcacctttcaagtaatgtggatccatctattgagcatcttattcaagctaaattcggt
caaacaatgcatcatggacatcaacaaagtgatttgatggatcttatatcgcgttcaaag
catgggcagatgcagcctatggaacatcaaatccttcaagagcagctgaacggacggcaa
ttggcaatgggtttgaggcagcgtgtggagatggaggagagacagcgtggttctgcctgg
cctgttgatgagtctatccagttcctcggtaattctggcggtggtgctcatcgttcgggc
tctgcaggaattggacaattagaattttaccaacaacaacaaagaccatctccggaggag
catatgagcaaccttgaacggaatctttcattgcaagaccgaattcagcgaggtctttat
aatccgagcttaatgcaatttgagaggtcaatgtctttgcctggcggtggtcctggaatg
agcctggatatgatcaattcaatggctcgtggtcaaggtttgggtatgcaggaaccaagt
gcgcgaatgcagcctgctggccaaggtcctgggttctctggtgtctactcccaccaatct
agccatccttcatctgcaaatttgttccacccttctcatttggatgccgtcgagggacag
tggtctgagaataatggtcaaccacctagtgactggatggattctaggattcagcaatta
caaattaatgaaaggcacaaaaggcaatctgaagctggaagggctgctgaagacccaagt
ttatggatgtcggccggaagcagcgatgatacatcaaagaggttgcttatggaactgctt
cagcagaaaccaggtcaccagcctactgagcaattagatgcaactggggtatcctatgat
aaaaggctaccaccttctagtcactcaaatcattcatttaatcttctgtcagatcgagaa
ccagatctgaatcaaccatttgccatgggttcttatggttctaattcaggtgggccactg
cataacaaagtaattgaagagcaggttggtctggaaaccactgaaaggttcttgcttaga
tctaattctggagcattaaatgatagagctcaatacttttctggtatgaatgagaactct
caggcaatatacccaaatgcaaacatgactggcaagtcttctaccgattttttagatttg
gagcgaaaaatgcatggttctaagagtgaagttggaacaaggaaaatatctgcatcagag
tctagtgatgaatttgttcagcatgaaggggtggctgctagcaatcgtggtgatatgccg
aataatgtcatgagtaggcatacttcgcaagctggtgcggctgctggcatatatgataac
aaaatgcagaggagcagctctgttggagaagatgttaaagataggatggcagctgtgccc
ttgaaaagacaggaaaatgtgttgtcaaaacgaccgcctgtttcgagggctgcttcgtct
caagaaggtttatctgaactggcttctgaaactattgtcagaggaaagaatatactgggt
ggtagtacactgccatctgaagcaggtagacgggaggcaggggggaatccacctaaccag
actgctgagattctgtcctccaagaaagatgtgcgctacaggagaacctcgtcttgtggg
gatgcagatgtatccgaaacgacatcattcagtgacatgcttaaaagcaatgcgaaaaag
ccgccacaaccagagagtcatgctgctgcagctgctacagaatcctctgaaggggggcgt
agcggcaagaagaaagggaagaaagggagacaaatcgatcctgctcttcttggtttcaag
gttacaagcaaccgtatcatgatgggggagatacaacatgcagatgatttgtaa
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integrated database retrieval system
