Daucus carota (carrot): 108196020
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Entry
108196020 CDS
T05350
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108196020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108196020
03036 Chromosome and associated proteins [BR:
dcr03036
]
108196020
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108196020
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108196020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
108196020
NCBI-ProteinID:
XP_017218563
UniProt:
A0A164U6S2
LinkDB
All DBs
Position
7:34369333..34378004
Genome browser
AA seq
1043 aa
AA seq
DB search
MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCL
SEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDE
SSKPVVGQGLNKEAEVTLVVQIRYRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFL
VHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHL
GLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSP
PAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHS
RNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSNSREISSVVNLEKVAFDKVVRDENNQ
VSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQ
LEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARSNVLEDSQDDTMQDRKDSDQDIDQ
EALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGD
VRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLN
IDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVE
RFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLH
VLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQF
IEELGIPPSWMDEALAVYSTYCGDLPKALEHFLRCANWQKAHSVFVTSVAHSLFLSDEHS
EVWRLAISMEAHKSEIENWDLGAGIYISFYQLKSSLQEDMDTMNEMDSLESKNEECRNFL
SCLNESLTKFGSKLPIDARVAYSKMAEEVSNLLLADNSEGVTCEIQLSCFNTVFSAPIPE
NLQSNHLHDAVSVFTSYLSEVAS
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgatcttgggtctattgactcctttggcctccctgtatctgagtctcagtgt
aaaaaaaggaaatttgtgttaaatgacactgatgcgtctatcgtgggtaagcttccctgc
agtatggatgcttccttacctactttgttgtcttgtgattatttcatggaaccttgcttg
agtgaaatggccactcaagaactcctgaatcctggttactgccgtcgagtgcgggatttt
actgttgggagatctggttatgggcgtgttaagtttactggggagactgatgttaggtgg
ttagatttggatcatctagttaaatttagtagacatgaactagttgtatatgaggatgaa
agttccaaacctgtagttggtcagggccttaacaaggaagcagaagtaaccttggtggtg
caaatacgatatagaaaagatgggctaatagcatttgtgaagaaactgaggctcatcaca
gaaagacagggagcggagtttatatcatttgatccctcaaacggggaatggaaattctta
gttcatcattttagcagatttggcttggatgaagatgatgaggaagatattacaatggat
gatgctgcaccagaagttgaggaacctcatgagattagtggtggtgaagtttatggagct
gatgacaaaaatgccattattgatccaactttgctttcacattcccttccttctcacctt
ggtcttgatccagtgaaaatgagggacatgcgaatgatgatgttctctgctgaggatgag
gatgagtattctgaggaaatgaatggttcaatgtcacatcagaagcagttcttccataat
caatccaaacggtctcctctgaaacaggcttctcgcaggacggtccacagacctagcccc
cctgctataagaaagacaccattagctctgctggaatataatcctggtaattttgagtct
agcccacccgggtccattttaatggcccaacagaataagggcctatctcttaagccaaca
aaactagacggatttaaactggatatgaagcatgattcaccggttacagcaagccattct
cgtaatgtagttgatgcatcattgttcatgggtaggtcatttggggtaggatggggtcct
aatggcatccttgttcacgctggtgcgcctgttgggaatagtaactcgagagaaatatct
tcagttgtcaatttagagaaggttgctttcgacaaagtggttcgagatgaaaataaccaa
gtcagtgatgatcttattgatttctgttttgattctccattgaaatttcacatggaacta
aagcacgaaacaaaagaaattggtactggatcctgtaaactaaagctccagaaacttgtc
tgtgatcccttgctgctttcagatacttgccggggatatatagggatcacagaagagcaa
ctagaggtccctgggttaacttcctatgctcgtgtaatcctaatgcaccaagtacaggtg
tgggagttgataaaagtccttttttccttgaaggaatcacgagcgcggtcaaatgtactg
gaagacagtcaggacgacacaatgcaagataggaaggatagcgatcaagacattgaccaa
gaagcactagagttgattaggagggctgagttcagttactggttacaagagagtgtctgc
catcgtgtacaggaagaattaagctcgtcggatgaatcaaatgatttacagcaaatattc
ctgcttttaactgggagacaactggatgctgctgtagaactgtctgcttctagaggagat
gttagactagcatgtctgttaagtcaggctggtgggtccacggtaaatcggtcggatatt
ttcaaacagcttgaaatatggagaaataatggtttggactttaactttattgagacagac
agaacaagactatttgagttgcttgcgggtaatattcatggagctttagacggcttaaat
attgactggaaaagatttttagggttattgatgtggtataaccttccaccggaaacttct
ttgccagctatttttcaaacgtatcagaagcttcttaatgatggaatggcacctgatcct
gtccctgtttatattgatgaaggagcagtagaagaaggtatgacaagggatacagtggag
cggtttgacattgcatattatctcatgcttcttcatgctagtggagaaagcaaatatagc
gttgtgaagaccatgttcagtgcttttgcttcaacaaaagatccacttgactatcatata
atatggcaccaacgtgcagtattacaagcattaggaactttcaattcgaatgatcttcat
gtgcttgatatgggactagtttctcagctattgtctgtgggaaaatgtcactgggccatt
tatgtggtgcttcacatgccctatcgcgatgattttcctaatctgcaggccagcgttatc
agcgaaatcttattcctgtattgtgaaacttggagttctcaagaatcacaaatccagttt
attgaggaattgggaattcctccatcatggatggacgaggctctggcagtttattctact
tattgtggtgatctgcccaaagcccttgagcattttctgcgatgtgcaaactggcaaaag
gcacattcagtatttgtgacttctgttgctcattctttgtttttgtcagatgaacattca
gaggtatggaggcttgcaatttcaatggaagctcacaagtcagaaattgaaaattgggat
ttgggagcgggaatatacatatccttttatcaacttaaaagttccttgcaagaagacatg
gataccatgaatgaaatggattctcttgaaagtaaaaacgaagaatgtagaaacttttta
agttgcttaaatgagtctttgacaaagtttggtagcaagttgcctattgatgcaagagtc
gcatattcaaagatggctgaagaggtcagcaatttgcttttagctgataatagtgaaggg
gtgacatgtgagattcagttgagctgcttcaataccgtattcagtgcacctatccctgaa
aacctccagtcaaatcatttgcatgatgcagtatcagtttttacgagttatctttctgag
gtagcctcatag
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integrated database retrieval system
