KEGG   Daucus carota (carrot): 108196129
Entry
108196129         CDS       T05350                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
dcr  Daucus carota (carrot)
Pathway
dcr04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    108196129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dcr04131]
    108196129
   03029 Mitochondrial biogenesis [BR:dcr03029]
    108196129
Membrane trafficking [BR:dcr04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    108196129
 Others
  Specific organelles associated proteins
   Auto phagosome
    108196129
Mitochondrial biogenesis [BR:dcr03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    108196129
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ATG16 Beta-prop_TEP1_C ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st Beta-prop_VPS8 NBCH_WD40 WD40_RFWD3 Beta-prop_EIPR1 WDR54 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 eIF2A Beta-prop_DCAF12 PEP5_VPS11_N Beta-prop_RIG_1st Cytochrom_D1 CCDC93_CC DUF4407
Other DBs
NCBI-GeneID: 108196129
NCBI-ProteinID: XP_017218742
LinkDB
Position
7:39552063..39557321
AA seq 511 aa
MLGGGEEVAIDAIKHALRALRKRQLVEEGAHGPAFVALSRPFIFQGSVWKEKAENLETEL
QQCYKAQSRLSEQLVVEVAESRASKSLLKEKEELIASLQNDLSQASEECTSLKELLEEKT
RAVDLVTSENQELKAQLEETRVRADAALAENKMLIDRWMLQKMQDAEKLNEANAIYEDML
DKVKASSIEQLARQQVDGVVRQSEEGAEYYVESTIPTTNKYKIPAHQGGCAAMVFEYNSN
KLISGGQDQTLKLWDTNSGSLGRTLHGCLGSVLDLAITHDNKTIIAASSSNNLFVWDKDS
GRIRHTLTGHVDKVCAVDVSRFSNRNVASAAYDRTIKIWDMQKGYCTNTIIFPSNCNALS
FGLDGLTICSGHVDGNLRLWDVQTGKLLSEVVAHSLSITSISLSRNGNVLLTSGRDNVHN
LFDMRTLEVCGTLRASGNRVASNWSRSCISADDSYVAAGSADGSVYVWSISQAKIVSTLK
EHNSSVLCCSWSGLGKPLVTADRNGTICTWT
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgttaggaggaggagaagaagttgcaatagatgcaattaaacatgctttgagggctctt
cggaaacggcagttggttgaggaaggagctcatgggcctgcttttgttgctctttctagg
ccctttatttttcagggttctgtgtggaaggagaaagcggaaaatcttgagactgaactt
cagcaatgttataaagctcagtcccgattgtcggagcagcttgttgttgaagtggctgaa
tccagagcttcaaaatctttgcttaaagagaaagaggagttgattgccagtttgcagaat
gaccttagtcaagcaagtgaagagtgcactagtctgaaagaacttttagaagaaaagaca
cgagctgtagatttggtcacaagtgagaaccaggaactaaaagctcaactcgaagagacg
agggtcagagctgatgctgctctggctgaaaataaaatgctaattgaccgttggatgctg
caaaagatgcaggatgctgaaaagcttaatgaggcaaatgctatctatgaagatatgctt
gataaggttaaggcgagcagtatagagcagcttgcaaggcagcaagtggatggtgtggtt
cgccagagtgaagagggtgcagagtattatgtggagtctactattcctacaacaaataaa
tataagatccctgcccatcaaggcggctgtgctgccatggtatttgagtacaactctaac
aagttgataagtggagggcaggaccagactcttaaattgtgggacacaaattccggttcc
ctcggtagaacgctgcatggttgtctgggctctgttcttgatcttgcaatcacccacgat
aataaaaccattattgctgcaagtagctcaaacaatttgtttgtttgggacaaagattca
ggtcggattcgacatactctgacaggtcatgtcgataaagtatgtgctgtagatgtgagc
aggttttcaaatcgcaatgttgctagtgcggcttatgatcgaacgataaaaatttgggat
atgcagaaaggttattgcactaatacaattatttttccaagtaactgcaatgcactttct
tttggcctggatggacttactatatgctctggtcatgttgatggtaatcttcgattgtgg
gatgtccagacgggaaagctactaagtgaagtggttgcacattcactttcgattacctca
atatctttatcaagaaatggaaatgtattattgacaagtgggagagataatgttcacaac
ttatttgatatgcgaactctagaggtttgtgggacactacgagcaagcgggaacagagtg
gcatccaactggagcagatcctgtatcagtgcagatgacagttatgttgcagctggttca
gccgatggatctgtctatgtttggtcaatatcacaagctaaaatcgtaagcactctaaag
gaacacaattcttctgttctctgctgttcatggagcgggcttggaaaaccactggtcaca
gccgacagaaatggaacaatttgtacatggacttga

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