Daucus carota (carrot): 108196210
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Entry
108196210 CDS
T05350
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108196210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108196210
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
108196210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNH
Vps39_1
zf-Vps39_C
Clathrin
zf-HC5HC2H
zf-HC5HC2H_2
DUF2175
Motif
Other DBs
NCBI-GeneID:
108196210
NCBI-ProteinID:
XP_017218880
LinkDB
All DBs
Position
7:complement(37549721..37564611)
Genome browser
AA seq
1033 aa
AA seq
DB search
MVHTAFDISQLIATSPYKINAVESYGHDLLISSSDGCLRIYSPESTASTTHDVVYGTLEL
RKEAYVLQRTIKGFSKKPMVAMEVVAARELLISLSEAIAVHRLPNLEIVAVIGKAKGANA
YSWEERRGLLCFARQKRLSIYRHDGGRGFVEIKELSVPDTVKSMSWCGENICLGLTRKVY
MILNVTSGTLSEVFSSGRNALPLVVSLPSGELLLGKDKVGVIVDQNGKLVQEGRICWSEA
PAAVVIRKPYAIALLPRHVEIRSLRFPYPLIQTVVLRNVRCLVRSNNTVIVAQDNSVHGL
FLVPLGAQIVQVTASGDFEEALALCKMLPPEDLNLRTAKEQSIHIRYAHSLFESGSYEEA
MDHFFQSQVDITHVLFLYPSLTLPKSSTVAEADKFLDFAGDALSRASSDMSDDFGTPFSP
SMETDERLGLESKKMSHNTLMSLIKFLQKKRFNIIEKATAEVTEEVVSYAVGDQTSRPNI
TIRGRLDNPKNSAARDMAAILDTALVQALLLTEQSSAAIELMKGLNYCDVEICEDFFLKR
NQHLCMIELYKCNSMHREALQLLLELVEGSKFGTHNAEIHQNFKPEMIIDYLKPLCEIDP
MLALEFSIPVLESCPTQTIELFLSANIPADLVNSYLKQHAPKLQATYLEQMLALNENGIS
ANLQNEMVQIYFSEVLDWQAKLSSEEKWDEKDYSPTRKKLLSALESISGSKSEVLLKQLP
QNALYEERAILLGKMNQHELALSIYVHKLHVPQLALSYCDRVYESGLHQHSSRTYSSNIY
LTLLQIYLNPRRTTKKFEKQINNLISSVNTSIPKVSSWNLIKTKGGRLSKKIAEIEGAAD
TNISPGSTDNGKSDGDTDDMVEEEGSNIMIDEVLDLLGQRWDRIHGAHALKLLPKETKLQ
NLLPFLGPLVKKSSEAYRNLLVIKNLREKENLQVKDELYKHRKTVVKITGESMCSLCNKK
IGTSVFAVYPNGQTIVHFVCFRDSQNMKVISKGTPLRRFSIAWYHKADKDGNSMRFVDLY
INLIYLSSLISFL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacactgcattcgacatttcgcaattaatcgccacctcgccgtacaaaatcaac
gccgtcgaatcgtacggtcacgatttgctcatcagctcatcggacggctgtcttcgcatt
tactcgcctgaatccactgcttcgacgacgcacgacgtcgtttacggaaccctagagctg
agaaaagaggcgtatgtgcttcaacggactattaaaggcttttcgaagaagcctatggtg
gcgatggaggtggtggcggcgagagagctgttgatttcgctctcggaagcgattgcggtg
catcggttacctaatttggagattgttgcggtgattggtaaggctaaaggtgcgaatgcg
tactcgtgggaggagaggagagggcttttgtgctttgcgaggcaaaagaggctttcgata
tatcgacatgacggtggaagaggttttgtggagattaaagagttaagtgttccggacacg
gttaaatcaatgtcttggtgtggtgagaatatatgcttaggtctcactagaaaagtgtac
atgatattgaatgtcacaagtgggacattgtctgaagtgttttcttcggggaggaatgct
ttacctctagtagtgtctctaccatctggggaactcctattaggaaaggataaggttgga
gtgattgtagaccaaaatgggaagcttgttcaagaaggaaggatctgctggtctgaggca
ccagcagcagttgtcattcgaaagccatatgcgatagctttattgccaagacatgtcgag
ataaggtctctacgatttccttatccattaatacaaacagtcgtactccgcaatgtccgt
tgtcttgtccgtagcaataatacagttattgttgcacaagacaactcggtgcatggactt
tttcttgtccctcttggtgctcagattgtacaggtaacagcatctggtgactttgaagaa
gccttggcattgtgcaagatgcttcctccagaggatttgaaccttcgaacagcaaaagaa
cagtcaattcatataagatatgcacactctctttttgagagtgggagctatgaggaggcg
atggatcattttttccaatctcaagttgatatcacccatgtcctctttttatatccatct
cttacgcttcccaaatcatctacggtggctgaagcagacaagttcttggacttcgcgggg
gatgctttatcaagagcttcgtccgatatgtcagacgactttggaactccattttcccca
tcaatggagactgatgagagattaggtcttgagtccaagaaaatgagccacaatacttta
atgtctctcattaagttcttgcagaaaaagagatttaatatcattgaaaaggcaactgca
gaggtgactgaagaggtagtttcatatgctgtgggagatcaaacgagtagacctaatata
acaatcaggggccgacttgacaaccctaaaaattcagctgcaagggatatggcagcaata
ttggataccgcccttgtccaagctctgcttttaaccgaacaatcttcagctgctattgag
ctgatgaaaggtcttaattattgtgatgttgaaatatgtgaggatttttttttgaagagg
aaccaacacttgtgcatgatagaactttataaatgcaatagcatgcatcgtgaggctctc
caacttcttctggaactagtagaagggtcaaaatttgggacacataatgccgagattcat
caaaatttcaagccggagatgataattgactatctgaaacctttatgcgagattgaccct
atgcttgccctggagttctcgattcctgttcttgaaagctgtccaacacagactattgag
ctctttctatctgcaaatatccctgcagatttggttaattcttatttaaagcaacacgct
ccaaaactacaggctacctatcttgaacaaatgcttgcacttaatgaaaatggaatctct
gctaatcttcaaaatgaaatggtccaaatttatttttctgaagtgcttgattggcaagcc
aagcttagttctgaagagaagtgggacgagaaagattattctcctacaaggaaaaaactg
ttgtctgctttggaaagtatctcaggatctaaatcggaagttttgcttaagcaacttcca
cagaatgctttgtatgaagagcgagcaattttgcttggaaagatgaaccaacatgagctt
gcgttgtcgatatatgttcataagcttcatgttccacaactggcactgtcctattgtgat
agggtatacgagtctggactgcatcaacattcttcgagaacatatagcagcaatatatac
cttactctactgcaaatctacctcaatcctcgaaggacaacaaaaaaattcgaaaagcaa
ataaataatctgatatcatcagtaaacaccagcattccaaaggttagttcctggaattta
atcaagacaaaaggaggtcgactatccaagaaaattgcagagatagagggtgcagcagac
accaatatcagcccaggtagcacagataatgggaaaagcgacggcgatacagatgatatg
gttgaggaagaaggttctaatattatgattgatgaggtccttgatcttttaggtcagagg
tgggatcgcatccatggagcgcatgccctaaaactcctaccgaaagaaaccaaactgcag
aacctgcttccatttctcggaccccttgtgaaaaaatctagtgaagcataccgaaacctt
ttggtgataaagaatttaagagagaaggaaaacctccaggtcaaagatgaactgtataaa
cataggaaaacggttgtgaagatcaccggagaaagtatgtgttctctctgcaacaagaag
ataggcactagcgtctttgcagtttatcccaatggccagacaattgtgcactttgtttgt
tttagagattcacagaacatgaaggtgatcagcaaaggcacgccactgcggagatttagt
atagcttggtaccacaaagcagacaaggatggaaactccatgaggtttgtagatctctac
attaatttaatatatttgtcaagtctaatatcatttctttga
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