Daucus carota (carrot): 108196273
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Entry
108196273 CDS
T05350
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 7 isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108196273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108196273
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108196273
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
108196273
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
zf-C3HC4_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
108196273
NCBI-ProteinID:
XP_017218976
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All DBs
Position
7:complement(37117934..37126520)
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AA seq
407 aa
AA seq
DB search
MARSLTDENSSSSEDESEYDVDARFPKRRCMPFPSAVLYYRRSNSNPPAIGPSRLRHEGT
SSDTPAVATIGTTSAAITGASTSQTESDETPDDTSDDLSTSSASEGEDDQIDDEDDDSEE
EEATLSPSPPVTPRPLMMNNPSENLANVVSNDVVPSGSGGRTSEHGPAILTDTDVLDCPI
CFDAFTSPVYQCDNGHTACASCCGKLRNKCPSCCSSIGYNRCRALEKVLEAVKITCLNSK
YGCKEKVSYNMKREHERSCSYEPCCCPHPGCNFEGSYKDIYLHFAGKHSASATRFKFDAS
FPVHIGANMKYKFLQEHDHSLFILNYGVQTVGNVANIICIGPSSLQNKYSYELEASYADS
SVKLTSSTQSQPKWMAGLPQRSFLVVPKCFIDSSGMHKINICIRRKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggccagatccttaactgacgagaattcatcctcatcggaagatgaatcggaatatgac
gtagatgcgaggttccccaaacgacgttgtatgcctttcccctctgccgttctctactat
cgcagaagcaacagcaatccccccgccatcggcccctcccgcctccgccatgaaggcacc
agcagcgatacccccgccgttgcgaccatcggtacaacctccgctgcaattactggcgca
tcgacatctcagacagagtctgatgaaactcctgatgatacttctgatgatttatctaca
tcgtctgccagtgaaggtgaagatgatcaaattgatgatgaagatgatgactctgaggaa
gaagaagcgacactgagtccgagtccgccagttactccaagaccgcttatgatgaacaat
ccttctgagaatttggcgaatgttgtttctaacgacgtcgttccatccgggagtggaggg
agaactagtgaacacggtcctgcaattttgaccgataccgatgtgttggattgccctatt
tgttttgatgctttcaccagtcctgtttaccagtgtgataatgggcacactgcttgtgcc
agctgctgtggcaaacttcgaaacaagtgcccttcttgctgttcgtcgatcggttataat
cgctgccgtgccttagagaaagttcttgaagcagtaaaaatcacctgtttgaacagcaag
tatgggtgtaaagaaaaagtaagctacaatatgaaacgtgagcatgagcgatcttgcagc
tatgaaccatgttgttgtccccatcctggctgtaattttgaaggttcctacaaggatata
tatctgcacttcgccggcaagcactcagcttcagccactcgcttcaagtttgatgcttct
tttcctgttcatataggtgcaaatatgaagtacaaattccttcaagaacatgaccactcg
cttttcatcctgaattatggtgtccaaactgttggaaatgtagccaatataatttgtatt
ggcccgagctctttacagaacaagtactcatatgaactggaagcaagttacgcagatagc
tccgtcaagttaacttcatcgacacagagccaaccaaaatggatggctggcctgcctcag
agatcctttctcgtggttccaaaatgtttcattgactcttctgggatgcacaagatcaac
atttgcatccgcagaaaaggttaa
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