Daucus carota (carrot): 108196369
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Entry
108196369 CDS
T05350
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
dcr04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108196369
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108196369
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dcr01009
]
108196369
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108196369
03036 Chromosome and associated proteins [BR:
dcr03036
]
108196369
Protein phosphatases and associated proteins [BR:
dcr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108196369
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108196369
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108196369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ComGF
Motif
Other DBs
NCBI-GeneID:
108196369
NCBI-ProteinID:
XP_017219115
UniProt:
A0AAF0XME7
LinkDB
All DBs
Position
7:41100509..41110528
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AA seq
512 aa
AA seq
DB search
MNGGDGEVVAAPPPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
LFERTDAKEHGGSRRDLERIDYPVSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
CQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNTDLVKSNGNGSIASSSVSSSPSLYR
SNGGCSDTSLSFSSNDLSFPPGGISSLHLPVVTSNETSLMARCRRVYAHAHDYHINSISN
NSDGETFVSADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYS
SSKGSIRLIDLRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFGKDGRYILSRDY
MTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGQRVATGSYSNL
FRVFGSVAGSTEATTLEASKNPMRRQVQTPARPARSLSSSLTRVVRRGAESPGIDANGNS
FDFTTKLLHLAWHPSENSIACAAANSLYMYYA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcggcgatggagaggtcgtggcagcgccaccgccgcttgagtggaaattctcg
caggtcttcggcgagcgcaccgccggcgaggaagttcaggaagttgatatcatatcagct
attgagttcgacaaatctggtgaccatcttgctactggtgatcgtgggggtagagtagtg
ttattcgaaaggactgatgcaaaagagcatggtggaagcagaagggatttggagaggata
gattatccagtcagtaggcatcctgaattccgctacaagacagaatttcaaagtcatgaa
cctgagtttgattatctgaagagcttagagattgaggagaaaatcaacaaaatcagatgg
tgccaaacagcaaatggggctctttttcttttgtctacaaatgacaagaccattaaattt
tggaaggttcaagagaaaaaggtcaaaaaaatatcagagatgaacactgaccttgtaaaa
agtaacgggaatggcagtattgccagctcaagtgtctcttcaagcccaagtttgtatcgt
tcgaatggaggatgctcagatacatctttatctttttcaagcaatgatttatcattccca
ccaggggggatttcatcactacatttacctgtggtaaccagcaacgagaccagcctcatg
gcacgatgcagaagagtatatgcccatgcacatgactatcatattaactcgatttcgaat
aatagtgacggggaaacatttgtttcagcggacgatttgcggattaacttatggaaccta
gaaataagtaatcagagttttaacattgttgatgtgaaacccgcaaatatggaggatcta
actgaggtgataacctcagcagagtttcatcctacccattgtaacacattggcatatagt
agttcgaaaggatcaatccgacttattgatttgcgacaatcagctttatgcgacacacat
tctaaactatttgaggaacaggaagcacctggtacaagatcttttttcactgagattatc
gcctctatttctgatataaaatttgggaaagatggaagatatatattaagtcgtgattat
atgactctcaagttgtgggatatcaatatggattctggcccagtttcaacctttcaggtt
cacgagtatttaagaccgaagttatgtgatttgtatgaaaatgattccatctttgataag
tttgagtgttgcttgagcggagatggtcagcgggtagcaactggttcttatagtaatttg
ttccgggtgtttggatctgttgctggtagtactgaagcgaccacattggaagctagcaaa
aatcctatgaggcgacaagttcagacacctgcaaggcctgctagatccttaagcagcagt
ctaactcgtgttgttagacgaggggccgaaagcccagggattgatgccaatggtaattca
tttgatttcaccaccaagttgctccatctggcatggcatccaagtgaaaactcaattgca
tgtgctgctgcaaacagtttgtacatgtattatgcatag
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