Daucus carota (carrot): 108196370
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Entry
108196370 CDS
T05350
Name
(RefSeq) nuclear pore complex protein NUP98B isoform X2
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108196370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108196370
03036 Chromosome and associated proteins [BR:
dcr03036
]
108196370
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108196370
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108196370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
108196370
NCBI-ProteinID:
XP_017219116
LinkDB
All DBs
Position
7:30966357..30972996
Genome browser
AA seq
1009 aa
AA seq
DB search
MSTYNSVLGDNGTKRNVSAGSAFQLRPAFGQSGSCYGGGFSGGIAVPPYGQSSIQRYPYG
YSDPSLFSGINGYAPLFGLNSYPFGLNSYPFGFTPSNGSTFAPVSTSMPTFGHNSSPPFA
YALPNGGTSMPTFGQTCSAFGSSLANRGTLMPTHGQNDATFGSALANGGTSMPTYGQTSS
GFGCPLANRGSLMPTHGQSNATFGSPIANDGTSIPLFGQNSATFGFAPANGGTSIPTFGQ
SNTPFGCVSADWGTTVPAFGRSTNSFWFNPSNTATSVPAWQCSYPRGPVTTNGGTPATTF
GVGISHFPPAPTDGTTSVSSPTNGSFSVPACGAPLFSTLTQAALSSPICGLYSGSTTHFP
TPTINASSSPGFTSGQTTTQFGTISNLNETSTCSDEIQSPYPGCQVETPLFRDSSSRPLT
PKVNCGGSRVAPYTETVEMDHVSQQSTRFMSISAMPVFRDKCHEELRWEDKQLGDNGDIP
LFHSARSGPPASNVMRCSKTQLPDFSTAIPISVMPEYPNKSFEELRWEDYQFNNAGGRVD
HDLAQLNYFRSHVSGTGSSFQNAMPSVPPNIFASRPTCFTFPTCSTPVSCNPFLNGSHEG
AYTLITQPPSIFGATIPFSHPNPSLISTSASKASTSGPSYFNYTSSAPSTSICSTSVTTP
VTAYVPCNFAPSISTLDDPSPSRSRAETPLAVEGPKTTSVRYGIYSVPANNLANASATCS
EVKVNKSANEEQKLLLPPKGIREGNGTEVVFSADTQETPTARTKVPLLLKDDSGISISGP
SEEWFIKIGFENISRLKHTSIYVHENGKVSIELSKSLEDGFIYEDKAGNPGEAFAAEHSR
GTNSVNSDHPSENLVSSNVYGLMPKLKHSDYFIEPRVEELAIKESFEPGFCSHVKDFVVG
HQRYGRIKFFGETDVRQLDVNSHIVFRNHEVILSMDENKKLPVGQGLNKPAEITLCNIKC
FDKAGNQHINGPKVDKYREKLMKKAAEQGAEFVSYDPVQGEWKFRVKHF
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgtataactctgtgttgggtgataatgggacgaagcgtaatgtttcggctggc
agtgcttttcaattgaggcctgcgtttggacagagtggtagttgttatggtggtggattt
tcggggggaattgcggtgcctccatacgggcaaagtagtattcagcgttatccttatggg
tatagtgatccatctctgtttagcggtatcaatgggtatgcacctctatttggccttaat
agttatccttttggccttaatagttatccttttgggttcaccccgagtaatggttcaact
tttgcgcctgtgtcaacttccatgcctacatttgggcataatagttctcctccttttgcg
tatgcccttcctaatggaggaacttctatgcctacatttgggcaaacttgttctgctttt
gggtcttccctcgctaatagaggaactctaatgcctacacatggacaaaatgatgctact
tttgggtctgcccttgccaatggtggaacttctatgcctacatatgggcaaactagttct
ggttttgggtgtccccttgctaatagaggatctctcatgcctacacatggacaaagtaat
gctacatttgggtctcccattgctaatgacggaacttccatacctctctttgggcaaaat
agtgctacttttgggttcgctcctgctaatggtggaacttctatcccgacatttgggcaa
agtaatactccttttgggtgtgttagtgccgattggggaaccacagtgcctgcatttgga
cgaagtactaattctttttggttcaaccctagtaacacagcaacttcagtgcctgcatgg
caatgtagttatcctcgtgggccagttaccaccaatggtggaactccagcgactactttt
ggggtgggtataagtcattttccgcctgccccaactgatggtacaacctctgtgtcgtcc
ccaactaatggttcattttcagtgcctgcgtgcggagctccattattttctacattaaca
caagcagctctatcatctcctatatgcggcttgtattcaggatctaccacacattttccg
actcctaccattaatgcatccagctccccaggatttacttctggccaaacaactacgcaa
tttggtaccatcagcaacttgaatgaaactagtacatgttctgatgaaattcagagtcca
tatccgggctgccaagttgaaactccgttatttcgggattcaagttctcgaccgttaact
cctaaggttaattgtggaggaagtagagtggcaccttacactgaaactgttgagatggat
catgtttcacaacagtctacaagatttatgtccatatctgccatgcctgtttttagagat
aaatgtcatgaagagctgagatgggaggacaaacagttaggagataatggtgacataccc
ctatttcacagcgcaagatctggaccaccagccagcaatgtaatgcgttgctcaaaaacc
cagttacctgattttagtacagctattccaatatctgttatgcctgaatacccaaacaaa
agctttgaagaattgaggtgggaagactatcagttcaataatgcaggtggtagagttgac
catgatttagcacaattaaattatttcaggagtcatgtttctggaactggtagctcattt
cagaatgctatgccttctgtgccacccaatatatttgcttccagacctacatgctttacc
ttcccaacctgtagcacacctgtttcttgtaacccctttttaaatggttcacatgagggg
gcttatactttaataactcagcctccctctatatttggtgcgaccatcccgttttcacat
ccaaatccctcacttatcagtacatctgctagcaaagcttctacatctggacccagttat
tttaactatacttcctctgcaccatctacctctatatgcagcacatctgttacgacacca
gtcactgcatatgttccttgcaatttcgctccaagtatatcaactcttgatgatccatca
ccatctagatctagggctgagacaccacttgcagttgaaggtccgaagactacatcagta
agatatgggatttacagtgtccctgccaataacttggcaaatgcctctgcaacatgtagt
gaagtcaaggtcaataagtcggcaaatgaagaacagaagctgttgctgccaccaaaaggt
attcgtgaaggtaatggtacagaggtggtattttctgctgatactcaagaaacccccaca
gcgaggacgaaggttccactcctgctgaaggacgattcgggaatctcgatatctggtcca
tctgaagagtggtttatcaaaattggcttcgagaatatatctcgcctcaagcatacatct
atttatgtgcatgagaatggtaaagtctctattgagttgtctaaatctctcgaggatggt
ttcatttatgaggacaaagctgggaaccctggtgaagcttttgctgctgaacacagccgt
ggaaccaattctgttaatagtgatcatccctctgaaaacttagtttcttccaatgtttat
gggctgatgccaaagctgaaacacagtgactacttcattgaaccccgagtcgaggaattg
gcaataaaagaaagctttgagccggggttctgcagccatgttaaggactttgttgttggc
catcagcgttatgggcgcatcaagttcttcggagagacagacgtgcggcagcttgatgtc
aactcacacattgtgtttagaaatcacgaggtaattctttctatggatgagaacaagaaa
ctgccagttgggcaaggtttaaacaagccagcagagattaccctttgcaacattaagtgt
ttcgataaagctggaaaccaacacattaatggaccgaaggttgacaagtacagagaaaag
ctgatgaagaaagcagcagaacaaggtgctgagtttgtgtcatatgatcctgtgcaagga
gagtggaaatttagagttaaacatttttag
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