Daucus carota (carrot): 108196479
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Entry
108196479 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108196479
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108196479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108196479
03041 Spliceosome [BR:
dcr03041
]
108196479
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108196479
Spliceosome [BR:
dcr03041
]
Complex B
Other components
Prp19-related factors
108196479
Complex C
108196479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
UTP6_C
Motif
Other DBs
NCBI-GeneID:
108196479
NCBI-ProteinID:
XP_017219267
LinkDB
All DBs
Position
7:complement(26980297..26984185)
Genome browser
AA seq
866 aa
AA seq
DB search
MASENKRHNTLKALPGSYKLWYAYLRRRLELVRNFPITHYEYKSLNNTFERALVTMHKMP
RIWIMYLSTLTDQKLVTATRQCFDRALCALPVTQHGRVWEIYLAFVRQRGVPIETALRVY
RRYLEYDPSQIEELIEFLVDSELWQEAAERLAGVLNDDTFCSIKGKTKHELWLELCDLLT
QRANEISGLNVDGIIRGGIRRFTDEVGRLWISLADYYIRRKLLMKARDVFEEGMTMVMTV
RDFSVFFDAYLQFEESMLALKMEDMSESEEEEGEGSMVEEEDDDEGDRLNVGDIKLKIKK
LWLSDDRDLNLRLARLEDLMDRRPELANSVLLRQNPHNVEQWHRRVKIFEGNLARQLETY
TQAVRTIDPMKAVGKPHTLWVALAKLFETHNGINDARVIFDEAVQVGYKAVDNLASVWCE
WAEMELRHKNFKVALDVMRRATAEPSVEVKRRVTADGNEPVQIKLHKSLRLWTFYVDLEE
SLGTLESTRAVYERILDLRIATPQIIINYAMLLEDHKYFEDAFKVYERGVKIFKYPHVKD
IWVTYLSKFVKRYGKSKLERARELFEHAVEMAPAESVKPLYLQYAKLEEDYGLAKRAMSV
YDQATKAVPACEKLSMYQIYIARVAEIFGVPKTREIYEQAIESGLPDKDAKTMCIKYAEL
EKSLGERDRSRGVYKHASEFADPRCDADFWCKWHEFEVQHGNEDTFREMLRIKRSVTAKY
SQSHILLPEYMMQKDLKPNSEEAMDPQKRNGILGDDMAALERQLAPPTNDAAAKDSTRML
GFVSAGVESQTEGGLMVAANKEDIELPDESDSEDEGNIEIPQKDIPETVYGGIRKRSAED
EDGDKGKEEEDKLGALVRIKRMKLGS
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgaaaataaacgtcataacaccctcaaagctctccccggaagctacaagctc
tggtacgcttatttacgacgtcgtctcgaattggttcgaaactttcccattactcattac
gaatataaatcgcttaataatactttcgaaagggctttagttactatgcataaaatgccg
aggatttggattatgtatttgtcgactttgactgatcagaagttagtaacggcgactagg
cagtgtttcgatagggcattgtgtgcgttgcctgttacgcagcacggtagggtttgggag
atttatttggcgtttgtgaggcaaagaggggttccgattgagacggcgttgagggtttat
aggaggtatttggagtatgatcccagccaaattgaggagttgattgagtttttggtggac
tcggaattgtggcaggaggcggcggagaggttggcgggggttttgaatgacgatacgttt
tgttcgattaaagggaagacgaagcatgagttgtggttggagttgtgtgatttgttgacc
cagcgtgccaatgagatctcggggttgaatgtggatgggattattaggggtgggattagg
aggtttacggatgaggttgggaggttgtggatatcgttggcggattattacattaggagg
aagttgttgatgaaggcgagggatgtttttgaagaggggatgacaatggttatgactgtg
agggattttagtgtgttttttgatgcgtatttgcagtttgaagagagtatgcttgctttg
aagatggaagatatgagtgagagtgaggaagaggagggggaaggatcgatggttgaggag
gaggacgatgatgaaggggatcggttgaatgttggagatattaagttgaagattaaaaag
ctttggctgtcggatgatagagatttgaatttacggttagctcggttggaagatcttatg
gataggaggccagaattagctaatagtgtgctgcttaggcaaaaccctcataatgtggaa
cagtggcataggagagttaagatatttgaaggtaaccttgctaggcaactggagacctat
acgcaagctgtacggactattgatccgatgaaagctgtgggaaagcctcatactctgtgg
gttgccttggctaaattgtttgagactcacaatggtatcaatgatgctagggtgatattt
gatgaggctgtacaagtaggctacaaagctgtggataatttggctagtgtttggtgtgaa
tgggcagagatggaactaagacacaaaaattttaaggtagcacttgacgtgatgaggcgg
gctacagctgaaccatcagttgaggtcaaacgtagagtgactgctgatggcaatgaacct
gttcagataaagctgcacaagtccctcaggctttggacattctatgttgacttggaggag
agcttaggtaccttggagtcaactcgtgcagtgtatgagaggatattggacctaaggatc
gccacaccccaaattataatcaattatgctatgctcttggaagaccacaagtacttcgag
gatgcttttaaggtctatgagcgaggcgtgaagatatttaaatatccacatgtaaaggat
atatgggtgacttatctttctaaatttgttaaaagatacggaaagtcgaagcttgaacga
gccagagagctatttgagcatgctgttgaaatggctccagctgaatcagtgaagcctttg
tatttacaatatgctaaattggaagaggattacggtctagccaagcgagcaatgagtgtt
tatgatcaagcaacaaaggctgttcctgcctgtgaaaaattgagtatgtaccaaatatac
atagcccgcgtggctgaaatattcggggtaccaaaaactagggaaatatatgagcaagca
atagaatctgggcttccagacaaggatgctaaaacaatgtgtataaaatatgctgaactt
gagaagagtttaggagagagagatcgctcgcgtggagtatacaagcatgcatctgagttc
gcagatccaagatgtgatgcagacttttggtgcaagtggcatgaatttgaggttcaacat
ggtaatgaagatacttttagggagatgctacgtatcaaaaggagtgttactgcaaagtat
agtcagtcgcacattcttcttcctgagtatatgatgcaaaaggatctaaagcctaattca
gaggaagcaatggaccctcagaagagaaatggaattcttggtgatgatatggctgctctt
gagaggcaactagcacctcctacaaatgatgctgccgctaaggatagcacacggatgctg
ggctttgtgagcgcaggagttgagtcgcagaccgaaggaggtctgatggttgctgctaat
aaagaagacatagagctgccagatgaaagtgatagtgaggacgaaggtaatattgagatc
ccccagaaagatattccagaaacagtttatggtggtatacggaaaagatccgcagaagat
gaagatggtgacaagggtaaggaggaggaagataaacttggtgctcttgtgcgtataaaa
agaatgaagctagggtcataa
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