Daucus carota (carrot): 108196634
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Entry
108196634 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108196634
03009 Ribosome biogenesis [BR:
dcr03009
]
108196634
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108196634
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108196634
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108196634
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ARTD15_N
Motif
Other DBs
NCBI-GeneID:
108196634
NCBI-ProteinID:
XP_017219501
UniProt:
A0AAF0XIL3
LinkDB
All DBs
Position
7:complement(4903517..4913637)
Genome browser
AA seq
747 aa
AA seq
DB search
MAEEELGFTFEPPSDEEIDDYANQSSDSDSEQQEHNQQASSEEENDDVVHNKKKQSPWDF
SSFTESVADEHARRSTTSIDYKISKAIQQLAISIPKDDEVDVDEKPDRQEPFRDEDGDED
AGAEHGEKKAKPFFSSADGVSFRANSFMELNLSRPLLRACEILGYNKPTPIQAACIPLAI
NGRDICASAITGSGKTAAFALPTLERLLCRAKGTPPAVRVLILTPTRELAVQVHSMVEKL
AQFVKDIRCCLVVGGLSTKLQESALRSKPDIVVATPGRMIDHIRNSMSVHLDELAVLILD
EADRLLELGFSAEIRELIRECPKRRQTMLFSATMTEEVGELIKLSMNKPMRLSADPSTKR
PARLTEEVIRIRRTREGNQEAVVLAICSKTFTSKVIIFSGTKQAAHRLKMLFGLAGFKAA
ELHGNLTQAQRLDALELFRKQGVDFLIATDVAARGLDIIGVQTVINYSCPRDLNCYIHRV
GRTARAGREGYAVTFVTDNDRSLLHAIAKRAGSRLKSRTVAEQSINKWAELIDQMEDQVA
LILQEEREEMALRKAEMEATKAENMILHRDEIYSRPKRTWFATEKDKKLIAKSVKESLEK
GAGSGNQVISAQQAEDVKMKEKKKREREKNLPRKKRRKLEAARMELEDDNEFESHGKDKK
EKGISLVDVGKIRAKSAKAAMKSAEAGKNPRKQSNKSKRPSKLPQSRTSEMQELFQSDMS
EKRQKRVGLGVGKKKSSFNSKSRYKRK
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggaagaattagggtttacatttgaaccaccaagcgacgaagaaatcgatgat
tacgcgaaccagagcagcgactcagattcagaacaacaagaacacaatcaacaagcctca
tctgaagaagaaaatgatgatgttgttcacaacaagaaaaagcagtcgccttgggacttc
tcctctttcaccgagtctgtcgccgacgaacacgctcgccggagtactacttctattgat
tataagattagtaaggcgattcagcaactcgcgatttctattccgaaagatgacgaggtt
gacgtagatgagaaaccggaccggcaggagccatttagggatgaagatggtgacgaagat
gcaggtgctgaacatggcgagaagaaggcgaagccgttcttttcctcggcagacggagtt
tcttttcgcgcaaattcatttatggagttaaatttatccagacccttacttcgtgcctgt
gaaatcttgggatataataagcctacacctattcaggctgcttgtatacctttggcaata
aatggacgtgatatatgtgcaagtgctattactggttcaggaaagacagctgcctttgct
ctaccaacactggagagattactgtgtcgtgccaaaggaacacctccagctgtaagagta
cttattctcactccaactagggagttggctgtccaggttcacagtatggtagaaaaactt
gctcagtttgtgaaagatatcaggtgctgtttggtggttggtgggctttctacaaagttg
caagaatcagcattgaggtccaaaccggatattgtcgtggccactcctggacgtatgatt
gatcatatacggaactctatgtctgtacatcttgatgaacttgcagtcttaatccttgat
gaggcagaccgtcttctagagcttggatttagtgctgaaatacgtgaactgataagggaa
tgtcctaaacggagacagacaatgttgttttctgcaaccatgacggaggaagttggtgag
cttatcaagctatctatgaacaaacccatgcgtctctcagctgacccatctacaaaaaga
ccagcaagattaacagaagaagtaattagaatacgacggacaagggaaggaaaccaagag
gctgttgttctggctatatgttccaagacattcacgtccaaagttattatattcagtgga
acaaaacaggctgcacataggttaaagatgttgtttggattagctggatttaaagctgcc
gagcttcacggaaatctcactcaagcacagcgccttgatgcattagaacttttccggaag
cagggagtggattttttgattgctacagatgttgctgctcgtggacttgatattattggt
gttcaaacagttataaattactcatgccctcgtgatcttaattgctacatccatcgggtt
ggtcgaacagctagagctggtcgagagggatatgctgttacttttgttactgataatgac
agatcactacttcatgctattgcaaaaagagctggttcgaggttgaaaagccgaactgtt
gcagagcaatcgataaataaatgggccgagttaattgatcaaatggaggatcaagttgct
ttaattcttcaagaagaaagggaggagatggccctgagaaaagctgaaatggaggccaca
aaggcggaaaacatgatcctacacagagatgagatatattcacgccctaaaagaacttgg
tttgcaacagaaaaggacaaaaaacttatagctaaatccgtcaaggaatctcttgagaaa
ggagcaggttctggaaatcaagttataagtgcccagcaggctgaggacgttaaaatgaag
gagaagaaaaagcgagaacgagagaaaaatctgcctagaaagaagaggaggaagctagaa
gcagccagaatggaattagaggacgacaatgaatttgagagtcatgggaaagataaaaag
gaaaaagggatatctctggttgatgtgggtaaaattcgagccaagtcagcgaaagctgca
atgaagtcggcagaagctggcaagaacccgagaaaacagagtaacaagtctaaacgtcct
tccaaacttcctcaatcaagaacatcagaaatgcaggaacttttccagagcgacatgagt
gagaaaagacagaaaagagttgggctgggtgttggaaagaagaaatcctcattcaacagc
aagtcaaggtacaaaagaaaatag
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