Daucus carota (carrot): 108196700
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Entry
108196700 CDS
T05350
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108196700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108196700
03036 Chromosome and associated proteins [BR:
dcr03036
]
108196700
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108196700
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108196700
PBAF complex
108196700
GBAF(ncBAF) complex
108196700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
108196700
NCBI-ProteinID:
XP_017219591
UniProt:
A0AAF0XM61
LinkDB
All DBs
Position
7:39823102..39826397
Genome browser
AA seq
547 aa
AA seq
DB search
MASNNNNNAMKNVGVPAAFGNSGVISQTTPMNHQMQSHLMAQANPQAQSGAHFQGHFQLT
DRHHAQALAQAQYAHLQQVRGQTPHNQFQAQAQPYSQINSQGVNNSGVSSPSIATPGTGS
AKRPPQKQSARPPNSSGPGSASPLKAMELTPAANRKKRKLPEKQIPDKVAALLPESALYT
QLLEFESRVDAALSRKKLDIQESLKNRQHVQKTLRIYVFNTFANQRQRVPEKENAEPPSW
SLKMIGRILEDETDPGATSMGQSSNVSYPKFSTFFKKVTIYLDQSLYPDNHVIVWDNSRS
PAPHDGFEVKRKGDKEFTAMIRLEMNYVPEKFQLSPALSEVLGIEVETRPRVISAIWHYV
KARKLQISTEPSFFMCDPPLKKIFGEDKVKFGMIPMKISSHLTPPQPIHLEYKIKLSGNG
SESSICYDVQVDIPFSLDKEMANFLANLDKHKEIDACDEAISSAIKKIHEHRLRRAFFLG
FSQSPADFIDSLIASQSKDLKLLSGDANHNAEKERRSEFYNQPWLEDAVIRYINRKPAAG
NDVPGST
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaataataataataatgcaatgaagaatgttggggttccggctgcgtttggg
aattcaggggtgatttctcagactacacctatgaatcatcagatgcaatcacatttgatg
gctcaggcgaatcctcaggcacaaagtggggctcactttcagggtcattttcagttgact
gataggcaccacgcgcaggctttggctcaggctcagtatgctcaccttcaacaagttcga
gggcaaactcctcacaaccaatttcaagctcaggcacagccttattcacagataaatagt
caaggggttaataattcgggtgtttcttcaccctctattgctacaccgggtacagggagt
gcgaaacgaccacctcagaagcagtctgctcggcctccaaattcttcaggtccaggttct
gcttctcctctgaaagctatggaactaactccggcagctaataggaagaagagaaagctt
cctgagaagcagattccagataaggttgctgctcttctacctgaatcagctctttatact
cagttgcttgaattcgaatctcgcgtagatgctgccctttccagaaagaagcttgacatt
caggaatctctcaagaaccgtcaacatgttcagaaaactcttcgaatatatgtatttaat
acctttgctaaccagagacaaagagtacccgagaaagagaatgctgagcccccttcatgg
tcacttaagatgatagggaggattctcgaagatgagactgatcctggtgcaacaagtatg
ggacaaagctcgaatgtttcatatccaaagttttcaactttcttcaagaaagttactata
tatttggaccagagtctttatccagataaccatgtaattgtctgggacaattctcgatcg
cctgcccctcatgatggatttgaggtgaagaggaaaggcgacaaggaattcactgcaatg
atcagactggaaatgaactatgtgcctgaaaaatttcaactttcacccgctctatcggag
gtccttggtatagaagtggaaacccgtccaagggttatatctgccatttggcactatgtt
aaggctagaaaattacaaatttcaactgagccttctttctttatgtgtgatccaccactt
aagaaaatatttggggaagacaaggtgaaatttggtatgattccaatgaagatatcttcg
catctgactcctccccaacctattcatttggaatataagataaagctttctgggaatggt
agcgaaagtagtatttgttatgatgtacaggttgacattcccttctcactggacaaggag
atggccaatttcttggcgaatttagataagcacaaggaaattgatgcctgtgatgaagct
atctcgtctgctataaagaagatacatgaacatcggctgaggcgggctttctttctcgga
ttcagtcagtctccagcggatttcattgattcactaattgcttctcaaagcaaggatttg
aagcttctttctggagatgccaatcataatgctgagaaggagcgccgctcggaattctat
aaccaaccttggctggaagatgctgtcatccgttatatcaatcgaaaacctgcagctgga
aatgatgttcctggaagcacatag
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