Daucus carota (carrot): 108196717
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Entry
108196717 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108196717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108196717
03036 Chromosome and associated proteins [BR:
dcr03036
]
108196717
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108196717
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108196717
mRNA degradation factors
5'-3' decay
Decapping complex
108196717
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108196717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Cas3-like_C_2
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
108196717
NCBI-ProteinID:
XP_017219615
UniProt:
A0AAF0WB79
LinkDB
All DBs
Position
1:complement(54807858..54813382)
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AA seq
471 aa
AA seq
DB search
MNNQGRYQPGFRGTRGGGVFRGSPNYYQQRPGVQQNNQHQQLWLRKRPGGPGERRGGNTF
QAQAHNDSGSQDWKAQVKKPPPDNRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFDKP
SPIQEESIPIALTGSNILARAKNGTGKTAAFCIPALEKIDSDKNVIQVAILVPTRELALQ
TSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQHVHLLVGTPGRILDLTKKGVCLLNEC
SMLVMDEADKLLSPEFEPSVKELIDYLPQNRQILMFSATFPVTVKAFKDRYLGTPYVINL
MDELTLKGITQYYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVSRVELLAKKITELGYS
CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSETYLH
RVGRSGRFGHLGLSVNLITYEDRFNMYNIEKELGTEIKQIPPAIDQAVYCR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcaggggaggtatcagccagggtttagaggcaccaggggtggtggggttttt
cgtggaagcccaaattattatcagcagaggccaggtgtgcagcagaataatcagcatcag
cagctttggttgaggaaaaggccaggtgggcccggggaaaggaggggtggcaacactttt
caggctcaggcccacaatgattctggctctcaagactggaaagctcaagtaaagaaacca
ccacctgacaatcgttacaagacagaggatgtcactgccaccaaaggaaatgagttcgag
gactatttcttgaaacgagagctgctcatgggtatatatgagaaaggatttgataagcct
tcacctatccaggaagaaagcatacctatagcccttactggaagtaatatccttgctaga
gcaaaaaatggaactggcaaaactgctgcattctgcattcctgcacttgaaaagatagac
tcagataagaatgttattcaagttgctattctagtcccgactagggagctagcccttcag
acatcccaagtgtgcaaagaacttgggaaacatctaaaaattcaagtgatggtcactact
ggaggaaccagtctgaaggatgatattatgcgtttgtatcaacatgtccatttgctggtt
ggaacacctggaagaatattggatctgacaaaaaagggagtctgcttgttgaatgaatgt
tccatgctagttatggatgaggctgataagctgctgtcaccggagtttgagccttcagta
aaggagttaattgattaccttccccagaatcgacaaatattaatgttctctgctacattt
ccggttactgtcaaagcgtttaaggacagatatttaggaacaccgtatgtcattaatctg
atggatgaactgacccttaaaggtatcacacaatattacgcttttgtagaagaaagacag
aagatccactgtctcaatactctattttcaaagctacaaatcaaccaatcaattattttc
tgcaactctgtgagtcgagttgaactgttggccaagaaaatcacagaactgggctattct
tgcttttatattcatgctaagatgctgcaagatcatcgcaacagagtgtttcatgacttt
cggaatggtgcatgcagaaatcttgtgtgcactgatctctttacgagaggaatagacatc
caagcagtcaatgtcgtcataaattttgattttccaaggacatcagagacatatctgcac
agggttggtcgttcaggaaggtttggacatctaggtttatccgtgaatttgataacttac
gaagaccgcttcaatatgtataatattgagaaagagcttggcaccgaaattaaacaaatt
cctccggcaatagatcaagcggtctactgtcggtga
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