Daucus carota (carrot): 108196725
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Entry
108196725 CDS
T05350
Name
(RefSeq) ubiquitin receptor RAD23d isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03420
Nucleotide excision repair
dcr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108196725
09124 Replication and repair
03420 Nucleotide excision repair
108196725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
dcr03051
]
108196725
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108196725
Proteasome [BR:
dcr03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
108196725
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
108196725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
UBA_3
UBA_RAD5A
CUE
Rad60-SLD_2
Dsc3_N
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
108196725
NCBI-ProteinID:
XP_017219631
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Position
7:3759584..3766717
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AA seq
385 aa
AA seq
DB search
MKIFVKTLKGSQFDIQVNPHDSVADVKRSIETVQGSDVYPAAQQMLIYQGKVLKDGTTLI
ENNVAENSFVVIMLSKSKSSSGGGSTTSTAAAPKETETSAAPSLVPTPAVSQSPASTLAA
PAPAPAPAAAVAPVPVEAAGRPEADVYDSAASNLVAGSNLEGAVQQILDMGGGTWDRDTV
IRALRAAYNNPERAVEYLYSGIPEQAEAPAVAPSPPIGEAATSPGQPSPAAAQPLPIAST
GPNANPLDLFPQGLPDMGSNAAGAGNLDFLRNNQQFQSLRAMVQSNPQILQPMLQELGKQ
NPNLMRLIQEHQADFLQLINEPIEGGENLLGQPQAISVTPEERDAIERLEAMGFDRDLVL
EVFFACNKNEELAANYLLDHMNEFE
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaagatattcgtcaagacattgaagggcagtcagttcgacatccaagtcaatcctcac
gattcggttgctgatgtgaagagaagtatagaaacagtgcaaggatcagatgtttatcct
gctgcacaacagatgcttatttatcagggtaaagtgcttaaagatggcactacattgatc
gaaaacaatgtcgccgaaaatagttttgttgttatcatgttatccaagagtaagagttca
tctggcgggggttcaaccacatcaacagcagcagcccctaaggaaacagaaacaagtgct
gcaccttctttagttccaacaccagcagtttctcaatctccggcttcaaccttggctgca
cctgcacctgctcctgccccagctgctgctgtagctcctgtccccgtggaagctgcaggc
aggccagaggctgatgtttatgacagtgcagcatcaaatttagtggctggaagcaatctc
gaaggagcagtccagcagattcttgacatgggtggaggcacatgggatagggatacagtt
attcgtgcccttcgtgctgcttacaacaatccagagagagctgtggaatatctttattct
ggtatccctgagcaagctgaagctcctgcggtggccccatcaccaccaattggtgaggct
gcaacctcccctggtcagccttcaccagcagctgcccaacctcttcccattgcttccacc
ggaccaaatgcaaatcctttagatctcttccctcagggtcttcctgacatgggttctaat
gctgctggtgcaggcaacttagattttttacgcaacaatcaacagttccaatctttgcga
gctatggtgcagtccaatccacaaattttacagcccatgctccaggagttagggaagcag
aatccaaatctaatgaggcttattcaagagcatcaggctgattttcttcagctaatcaat
gaacccattgaaggcggcgagaacttactggggcagccacaggctatatcagtcacacct
gaggagcgtgatgccatcgaacgcctagaggcaatgggatttgaccgagaccttgtgttg
gaagtttttttcgcatgtaacaagaatgaggagctggctgcaaattacctcttagaccat
atgaacgagtttgaataa
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