Daucus carota (carrot): 108196818
Help
Entry
108196818 CDS
T05350
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108196818
Membrane trafficking [BR:
dcr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
108196818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
108196818
NCBI-ProteinID:
XP_017219748
UniProt:
A0AAF0XLS6
LinkDB
All DBs
Position
7:28065328..28075550
Genome browser
AA seq
1358 aa
AA seq
DB search
MAKESSIFEMEDQGDEDFLDYLVEGEDSNRDLVNKELDEVTSSTSCRNAVISERVDLKEN
VESGISAENVGMEDGGMDSLKNCNVGEDAMEVRTLNDKKSEENLRKEGSIKEVDWSAFSF
GGDGTGSYSDFFNELGGSSDNLFGNRENRSGVSLEHVGAEAGVTGRYTSSVNSGQNQEGQ
NYWSGSEQVVTGQDQSIQYWESLYPGWKYDSNTGQWFQLEGYNGSGCSLPNYDNNSNARL
VNSNVGTTQDPNLSYYHQTCHFDGTVPNYNQGSEINSGYTAHMLFDPQYPDWYYDSIAQQ
WKPLQSYTAPLMPQQVDNNQHSQNVDPSTVETTHGQNHSSYSNFEEPAVHCSPRLMKNNQ
SMRWCGTISDYGHQSFTNSQFQPVSQSKAFNFSENEILQNYYACNSADQHNQQTWNNQSG
TANLYEQANKCYANEYGVAESFNPDKNLYSHNNEHRREAIHQSQFSLSCTDNQKTPTVLQ
QPAQNGSQSFSTSIEGRSSSSRPPHALVSFGFGGKLIVKRGYCSPATNSMSTQVSDGGVT
DTGGVINIFSLIELVMDKHASSIRLGARDYFCCLYRQSLPGPLVGISVSYKELTRWIDDK
IVNCGSPDIDYRKGDLLRLLFSLLKIACHHKGNLRSPFGTDNALKDNDSPEFAVAELFAS
AKKKVPEYSDLGRYMQYFPSEGKMQAVALEVQKLLVSGRIIEALRFAQDGQLWGPALVLA
TQLGHQFYGETVKQMALRQLIAGSPLRTLCLLISGQPADVFCFYDSDSLSVTEKISQQPS
QAGALAMLCNWEENLAIITANRTKNDELVIIHLGDCLMKEKAEVIGAHICYLVAEANFGS
YSDKARMCLISADHWRSPRTYASPEAIQMTELYEYSKSLGNPQFLLLPFQPYKLIYAFML
AEVGKISEALRYCQAILKCWKISRAPEVDTWKYLVSSLEERLRIYQQGGYAASSSPAKLV
GKFLKLFDNTAQRVVGGLPPPVPVTSSNASRHHENQRGPRVSSSQSTTAMPSLVPSESME
PISEWTGSQKPRHSRSISEPDIGKSPRKSDSSKDASSPDMHENESGFGGYYRFGRFGSQL
FHKTVGMVLRSLPDRQAKLGEKNKFYYDENLKRWVEEGIDHPAEEAALPPPPTTSALQKT
ASQENLNDRLQAENLHGSSGQDFIGSSSSDSIPGIPPIPRSSMNSTTRGRMGIRARYVDT
FNKGAAIPTNIPASSGISPKPGGGPTAKFFVPTPMSSSSNEIERTSGEHVQESNNTNSSP
TSSTEDDPPSTTLKPLSGALKRNPSMGSILTKSSLRSNSNSNLSPHSRRTVSWSGSFNEV
SFIPDSAEYKTPGEESSPQMFLSPVSSIQDDFQEVELN
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagagtcatctatttttgagatggaagatcagggagatgaggatttcttagat
tatttggttgaaggtgaggatagtaatagagatttggttaataaggagttagatgaggtg
acatcgagtactagttgtagaaatgcagtgattagtgaaagggtggatctaaaggaaaat
gtcgagtcagggattagcgcggagaatgtgggaatggaggatggaggtatggattcgttg
aagaattgtaatgtgggtgaagatgcgatggaagtgagaacattgaatgataaaaagagt
gaggagaatttgcgaaaagaggggagtattaaagaggttgattggagtgcattcagtttt
ggtggtgatggaacggggtcttactctgatttttttaatgagttaggtggtagttcagat
aatttgttcggaaatcgtgaaaatcgttctggtgtttcattggaacatgtgggtgcggag
gctggtgttacgggtagatatacgagctctgttaattctggacagaatcaagaagggcaa
aattattggtcgggttcagaacaagtggtgactgggcaagaccaaagcattcagtactgg
gaaagcctttatccaggttggaaatatgattctaacactgggcagtggtttcagttggaa
ggctacaatggaagtggttgtagtctaccaaactatgataataatagtaatgccagatta
gtaaatagtaatgtaggtacaactcaagatccaaacctgtcctattatcatcaaacatgt
cattttgatggcactgttccgaactacaatcaaggttcagaaataaatagcggatacaca
gctcatatgctgtttgaccctcagtaccccgattggtattatgattcaatagcccaacaa
tggaaaccattgcaatcttacactgcaccgctgatgccgcaacaagtagacaataaccaa
catagtcaaaatgtagatccttcaacagttgaaaccacacatggacaaaatcatagcagt
tacagtaattttgaggaacctgcagtgcactgttcacccaggctcatgaaaaataatcaa
tctatgcgatggtgtggaactataagtgactatgggcatcaaagctttacgaattcacaa
ttccaacctgtgtcccagagtaaggcttttaatttttccgaaaatgagattctacagaat
tattatgcatgcaattctgctgatcaacacaatcaacaaacatggaacaatcaatctgga
accgctaatttatatgagcaagccaataaatgttatgccaatgagtatggagtggccgaa
agttttaatcctgataaaaacctgtattcacataataatgaacataggagggaggcaatc
catcagagccagttctcactatcttgcactgacaatcagaagacaccaacagtacttcag
cagccagctcaaaatggctctcagtcattctctacgtccattgaaggaagatcctcgagc
agccgtcctccacatgctctggtgtcttttgggtttgggggaaaactcattgtcaagcga
ggttactgttctcctgccacaaattcaatgtcaacccaggtctcagatggaggtgtgacc
gatactggtggcgtgattaatatattcagcttgatagaacttgttatggataaacatgct
tcatccatcagactgggtgctcgtgattatttctgttgcttgtacaggcaatcattacct
ggcccgttggttggtataagtgtttcctacaaagaattaactagatggattgatgataag
attgttaactgtggatcaccagacattgactatagaaaaggtgaccttttaaggttactc
ttctctttgctgaaaattgcatgtcaccataaaggaaatctacgatctccctttggcact
gataatgcattaaaggataacgattctcctgaattcgcagtagctgaactctttgcatct
gcaaaaaaaaaggtgcctgaatatagtgatctaggacgttacatgcagtacttcccttct
gaagggaagatgcaggcagttgctctggaggtgcagaagcttcttgtttccggtagaata
atagaggcattacgatttgcacaagatggacaattatggggaccagctcttgttcttgcg
acacagcttggtcatcagttctatggtgaaacggtaaagcaaatggccctgcgacaatta
atagcagggtcacctttgcgaactttatgcctgctaatttcagggcaacctgcagatgta
ttttgtttctacgatagtgacagtttatctgttactgaaaaaatatctcagcagccttct
caggctggggctcttgccatgctctgtaactgggaagagaatttagctatcataactgct
aataggacaaagaacgacgagcttgtgattatacatcttggagattgccttatgaaggag
aaagctgaggttattggtgcccacatctgttatttagttgcagaagcaaacttcggatca
tattcagataaagctaggatgtgccttatcagtgcagatcactggagatctcctcgaacc
tatgccagccccgaggctatccagatgacagaattatacgagtactcaaagtctcttgga
aatcctcagtttcttttactacccttccagccatataaactaatctatgcatttatgctt
gctgaagttggaaaaatttcagaagctttaaggtactgtcaagctattttgaagtgctgg
aaaatcagtcgagcaccagaagtggacacatggaaatatttagtatcatctcttgaggag
cggttacgcatttaccagcagggtggttatgctgctagttcatctcctgcgaaattggtt
ggtaaatttctcaaattgtttgataatactgctcagcgggttgttggaggccttcctcca
cctgttcctgtaacgagtagtaatgcttcgcgccatcatgagaaccaaagaggaccaagg
gtatccagtagtcagtccacaacggcgatgccatcattagtgccatcagaatcgatggaa
ccaataagtgaatggactggcagtcaaaaaccaagacacagtagaagcatctcagagcca
gacattggtaaatcaccaagaaagagtgattcttctaaagatgcaagttcgccagacatg
cacgaaaatgagtcaggctttggtgggtattaccggtttggtcgatttggctctcagcta
ttccataaaaccgttgggatggttttacgatcccttccggaccgtcaggcaaaactggga
gagaaaaataaattttattatgatgaaaatcttaagcgatgggtagaggaaggtattgat
catccagctgaggaagcggcattgccacctccgccaactacttcagctctccagaagacg
gcctctcaggaaaatttgaacgatagacttcaagctgaaaacttgcatggtagtagtggg
caagattttataggctctagttcttctgactcaattccagggattccaccaattccacgt
agttcaatgaactccacgactcggggaaggatgggtattcgtgcaaggtatgttgacact
tttaataagggtgctgcaatcccgactaacatacctgcatcttctggtatatctccgaag
cctggtggtggtccaactgccaagttttttgttcctacgccaatgtcatcttcatctaat
gagatagaaagaacaagcggagaacacgtgcaagaatcaaataacactaattcgagtcct
acatcatccactgaagatgaccctccatctacaacattaaaaccattatcaggagcacta
aaacggaatcccagcatgggtagtattttgaccaaaagttcgttgagatcaaatagtaac
agcaacctttctcctcactcgagaaggacagtatcttggagtggaagcttcaacgaggta
tcttttattccggattctgctgaatataagactcctggtgaagaatcttcaccccagatg
tttctttcacctgtaagtagcattcaggatgacttccaggaagttgaacttaattag
DBGET
integrated database retrieval system
